| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2828 |
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| Symbol | mshC |
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| ID | 5136145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2978108 |
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| End bp | 2978596 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640534272 |
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| Product | MSHA pilin protein MshC |
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| Protein accession | YP_001218678 |
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| Protein GI | 147674288 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATTA TAGGTAAAGG TTTTACCCTT ATTGAACTGG TAGTGGTGAT TATCCTACTA
GGGATACTCT CTGCTTATGC GGCAAGCCGA TTTTTGGGGC CTTCCTCCTT TGCGGTGGTA
ACCACGCAGA GTGAAATATT AGCCTCACTG CGGTTAACCC AAAGCCGCGC GATGCAGCGT
ACGGGGTATT GTAATCGTTG GCTTTTGACC AGCAACGCCG CCATTCAAGT TTCTCCGCAG
GCTATGCAAG GCAGTTGTCT TAGCGTTTTT CCCAGTAACC CTACCGATCC TTCGTGGGTG
GATGCCGCCG TCAGTGGTGT GGCGCTTTCC TTGGCGGGTT CGGGTGGGGC TTCTTTTCTT
GATTTCGATA GTTTAGGCCG TGCTACGCAA TGTATCAGTG CTGGGTGCAC GGTGAGCATC
AGCAGTTCGA CGCACAATGA GGTTCGCCAA GTCTGCATCA ATACCGAAGG GTATATCTAT
GCCTGTTAA
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| Protein sequence | MKIIGKGFTL IELVVVIILL GILSAYAASR FLGPSSFAVV TTQSEILASL RLTQSRAMQR
TGYCNRWLLT SNAAIQVSPQ AMQGSCLSVF PSNPTDPSWV DAAVSGVALS LAGSGGASFL
DFDSLGRATQ CISAGCTVSI SSSTHNEVRQ VCINTEGYIY AC
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