| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2084 |
|---|
| Symbol | holC |
|---|
| ID | 5136918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2241323 |
|---|
| End bp | 2241772 |
|---|
| Gene Length | 450 bp |
|---|
| Protein Length | 149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640533540 |
|---|
| Product | DNA polymerase III subunit chi |
|---|
| Protein accession | YP_001218000 |
|---|
| Protein GI | 147674807 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2927] DNA polymerase III, chi subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000000200147 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACCG CAACTTTTTA CCTGATTTCT CCAGATTCTG CTCAAGCAAC ACCAGAAGGC
TTCGCGCAGT ACGTGCTGTA TTTGACGCGT CACTTTGCCG CGCAAGGCGC ACGCATTTAT
CTGCAATGCC AAGATAAACC ACACGCCGAG CAGCTAGCTG AGCGATTTTG GCAAATCGAA
CCCGAACAGT TTTTAGCGCA CAATCTGGTC GGTGAAGGTC CCAAATCCGG TACCGCGATT
GAGATAGGTT ATGTGGGCGT TTCTCCCTCT TGGAATCGTC AACTGGCAAT AAATTTGGCG
GATAATCAGA CAACCTTTGC GCGTACCTTT ACCGAGGTGG TAGACTTCGT GCCCTGCGCA
GAAAATGCCA AGCAGCTGGC GCGCGAGCGG TATAAACTCT ATCGACAAGC AGGTTATCAG
CTGCAAACTG TTGAGATTCA ATATCCATAA
|
|---|
| Protein sequence | MPTATFYLIS PDSAQATPEG FAQYVLYLTR HFAAQGARIY LQCQDKPHAE QLAERFWQIE
PEQFLAHNLV GEGPKSGTAI EIGYVGVSPS WNRQLAINLA DNQTTFARTF TEVVDFVPCA
ENAKQLARER YKLYRQAGYQ LQTVEIQYP
|
|---|
| |