| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1483 |
|---|
| Symbol | |
|---|
| ID | 5136038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1593662 |
|---|
| End bp | 1594522 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640532941 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001217426 |
|---|
| Protein GI | 147673327 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0510] Predicted choline kinase involved in LPS biosynthesis |
|---|
| TIGRFAM ID | [TIGR02721] thiamine kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0577113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGA TTGCATGGCG AGAAGCAAGC GCACTGGATC CATCGCTGTT GTCATTAAAT
CACTTTTTCT CTGTGCCGCC AGAATATGCG CAGACCTTGA CCGGAGGTCT CACTAATCGT
TGCTGGAAAA TCGTTGCGGG CGATCGTGCT TTCGTGTGGC GTCCAGCAAC GCCTATTACC
AAAGCTTTCT CTATTTCTCG ATTTCAAGAG TATCAAATCC TCAAAGCGAT TGAGCATGAT
CATATCGGCC CGAAAGCCGA ACTGGTTAAT GAACACGGCT TGCTTGTGGA ATGGATCGAT
GGCGAATCAC TGCGTGATGG TATCGCTTTT GACGTGGTAT TGAAAACGCA AACGCGCATT
CATGAGTTGG ATATCCATCG CATTCCGGTA GCGCCTTTTA ACTATCTTGG TCGAGTTGAC
CACTACTGGC TACAGATCCG AGATGACCTG AAAACCGATG AGGTTAAAGC GCTCTATGAG
CAGTGGCGGT CTGTGCCCAA TCTCACCGAT GTGGGGCAAG TGCTTTGTCA CTTTGATCTG
GCTGGCTATA ACATGGTGAA AACCGAGCAA GGACAAAGAG TCATCGATTG GGAATACGCC
GCCTTGGCCG ATCCGCGCAT TGATTTAGCG CTGAGTATTG ATGTCGCTGG TGAAAACGTA
CTTGATGCGG TATTCCGTTA CTGCCAACGG CGCGAATTAT CCGATATCGA TGCTTGGGTC
TCTGGTGTTC AAGCTTGGCG ACCGCGTACC ACTATGATGG CAATGCTCTG GTATCTATTG
GCTTATCAAC TTTGGGCTGA CGAACTTTAT CGAGATCAGG CGCAGCAACT TGCACAGACT
TTGCAGTCGA ACCAAGGCTA G
|
|---|
| Protein sequence | MAKIAWREAS ALDPSLLSLN HFFSVPPEYA QTLTGGLTNR CWKIVAGDRA FVWRPATPIT
KAFSISRFQE YQILKAIEHD HIGPKAELVN EHGLLVEWID GESLRDGIAF DVVLKTQTRI
HELDIHRIPV APFNYLGRVD HYWLQIRDDL KTDEVKALYE QWRSVPNLTD VGQVLCHFDL
AGYNMVKTEQ GQRVIDWEYA ALADPRIDLA LSIDVAGENV LDAVFRYCQR RELSDIDAWV
SGVQAWRPRT TMMAMLWYLL AYQLWADELY RDQAQQLAQT LQSNQG
|
|---|
| |