| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1259 |
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| Symbol | vieS |
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| ID | 5137065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1335166 |
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| End bp | 1338606 |
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| Gene Length | 3441 bp |
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| Protein Length | 1146 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640532717 |
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| Product | sensory box sensor histidine kinase/response regulator VieS |
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| Protein accession | YP_001217203 |
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| Protein GI | 147674544 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTACT GGGGTGGGAC AGGTCAGGAG CCGATAGGTA TTGAGCATGA TTTTGCCTCA
GGGATAGCCA AAGAGCTCGG GATCAACATT GAGTACAAAG GCTTTGATAC CATTGAAGCC
TTACTTAACG CCGTCAGCAC GGGTAAAGCG GATATGGCGA TAGGGTTTGG GCAAACCCTT
GCGCGTGAAG GAAAGTTCCT ATTTTCTAAG CCTTTATATG AGAATGTACG CGTTATTTGG
TTACGCGATA AAGCCATGGA AGAAAAACCC TTTGCCAGTT TAAAATGGGT CTGTATTCAA
GGCACATCCT ATTGTGAAAT TCTCAAAGAT CGTGGTTATC CCAATATTAT TATGGCTCGT
AACTACAGCA GCTCTGTGGA AATGATTCGT CAAGGGATTG CGGATGCGAC GGTGACAAAT
TATGTTTCCT TAAATCACTA CTTAAGCCAA AAGCGTTTAG CATTGGGTAA AGTGATTTTT
GATCCAGACT TGGGCGTACA AACAAACCGT ATATTGATCA ATAACAATGA GCCTCTGTTA
TTGTCAGCAA TCAATAAAGT TATTGACGCT GACAAACAGG GACTGACGGA GAATAAATTA
AATTCGGCAG ATGTTTACTT CCTAAATGAT CAAGCGAATT TAAATATTTT ACGAAATGAA
AATGTTAATC CAGTCGTTCG CTATACAATT CAAGACGACT TATTTCCGAT GTCATATTGG
GATGAAAAAG AGAAAAAATA CAAAGGTTAT GTACATGATT TATTAGAGAG AATCAGTACT
AAGAGTATTC TTAAATTCGA GTTTGTTCCT GCCTACGGCC GAGATGTAGA AGATATGCTG
CGTCATGGCA AAGTGGATCT TATCCCTAGC TTTAATATGA CTTATGTCGA TGACCGATAT
TTCATCCATA CAGGCAGATA CACGGATATC CAATTTGGCT ATATAGAAAC AACTCGGCCT
TATACCACCC CAATTACTGG CATTCTTGAT CGCACAGGCA AGTTTAACGC TTATATTGCG
GTACAAAAGA ATTTATCTGA TGTGAAAGTA TACCGCAGCA TGTATGACCT TGAGCAAGCG
TTAGAGAAGG GGGATATTAC GCATGGGCTT CTTAATAAAG TACTGATTAA TCAGATGTTG
TTGGATGGTC ATCAAGACGC TTTCAAACTC TCCCCATTGA CTGAGGGGCA AGATCTTCGA
GCCGATATGA CGATGCTTGT ACGTAAAGAT GCCCGAGGTT TACAAAACAT GCTGCAAAAG
GTGTTAGCCA CCTTCAGCCA ACAAGAGATT GATGAAATCA AAGGTGCCTA TGACCGAGTC
ACAGTTTATT TTGGCTATGA CAAACAGAAA GTCCTGATAT ATGCCTTAAT CATATTGTGT
GGTTTATTAA GTATTGGACT TATTCTCACC TTATCGCTGA GTCGTTTACG CGGTAAATTA
CGCAGCTCCG AACAAGTTGC TAAGTTATCT ACTGAGCAGC TACGTTGGTT GACGGAATTA
CTGGACGCCA TTCCGAGCAT GATATTTATT TCGGATGAAA AAGATGAGGT TGTGTTAACC
AATGCGGCTT ATCGGAAAAT TTATCACACC TGCTGTGAAA AAGGGTGTGT TCAACCGCAG
CCTGAGTGTT CATTTCTTGC GCTTCCAGAC CAACATGAAG CGGAATTCTC GATCATTATT
CAAGCTCCCA AATCTAATTG CTCTATCGGC GAACACTATT TCCATGTAAC ACGTCGTGCC
ATTTCTCACC CGATTAATCA ACGTAAGTAC TATTTAACGC TGTTCAACGA TATTACGGAA
TTAAAAGAAA CTGAGCAGGC TTTGCGTCAA TCTAATGAGC AAGCGTTACA GGCGGTAGAA
GCGCGAAATC ATTTCTTGGC AGTCGTCAGT CATGAGTTAC GTACACCGAT TGCGGCGATG
CTGGGACTGA TGGAGATTTT GGCTTCACGT TTAAAAAACA GCGAAAGCCA ACTGCTATTG
ACCAATGCGA TAAGCTCGGC AGAGCGTTTG AAATTACACG TTAACGATAT TTTGGATTTC
TCAAAGATAG AGGCGCAGCA GTTACAGCTG GATATTGGGC TGTACAATTT AACCGATGAA
CTTGGGCCGT TATTGCGTGG ATTTGAAGCC AGTGCCCAGC TCAAAGAGAT TGAGTTTGAT
GTGATTTGGT CGCCGAATTC GTTACTGCTT GCGAACTTCG ATGCCTTGCG TTTTAACCAG
ATCGTGACCA ATCTTCTTTC TAATGCGATC AAATTTACTG ACCAAGGACG AGTGGTTTTT
AAAATCGACG TTGCACCTGA GATGTTAACT ATCGTGGTCG AAGATACCGG TTGCGGTATG
ACTCAAACGC AAATCGAGTC GCTGTTTGTT CCTTTTGCAC AAGCTGACAG CACAATCACT
CGTCGCTTTG GTGGAACAGG CTTAGGTATG TCGATTGTCG CCAACCTGAT TGAACTGATG
AATGGCAAGA TTGAGGTGAA GAGTGAGTTT GAGCAAGGGA CGCAAATCCA AGTGAACTTG
CCTCTTGTGA CGCAAACTTG TGATGAGTTT CGTGGGCAAG TCGTTGCTAT GTCTTATCGC
TCCCCTTATA TGCTGTGGGC AAAAGCGCTG GGAATGCGAG TGGAAGAGAA TGAAGAGTGG
GTCGAGCAGA GTGGCCACAA TATTTATCCA GATTTGCTGC TCAATAGGCT CAGAGAGGTC
TCCAATCTGA CTCAGGCTCA AACTGAGCCT GCCCATTCTC GTTTGCTACA AGGTCACGTA
TTAGTGGCCG ATGATGATGC GATTAACCGT TTATTGATCA AAAAACAGCT CAGTGAGCTT
GGTTTGAGTG CCACCTTGGT GAGTGATGGA TTGCAAGCTT TCGAAAAGCT CTCGCAACAT
CCTGAGCAGT ATGATTTGTT GATTACTGAC TGCCATATGC CACATCTTGA TGGGTTTGCT
TTAACGCGAA AAGTGAAGCA AGAGATATCC CTATTTAAAG GCGCAGTTGT GGGTTGTACT
GCAGAAGATT CGCGCCTAGC AGCGGAACAA GCTCTGCAAG CGGGTATGGA TAAGGTGATT
TACAAACCTT ATACCTTAGC CAATTTGCGC AAAGTACTCA GTCGTTATCT CACAACACAA
TGGGTCGCAC TGCCTGAACA ATCTTGGCTT GACGCTTACC AAGAAGAGGA ACGCGAGGAG
ATGGCAATGG TAGTGGCTGA GTCACTTGCT CAAGATATCG CTTTACTCAA TCAGCCAGAC
TGTGATGTCA AAGCACTGGC ACATCGAATC AAAGGGGCAG CCGGCTCCCT TCAACTACAG
CGGTTAGCCG ATTTGGCTAA AACCGTTGAG AAACAAAACG ATCCACAACA ACTTGTGGCC
GATAAGCAGC AACTGATCAA TGCCATGCAT GAAGTGGTCG AGCAGGCACA ACAGTGGCTT
CATCAGTATC AGAGCGAATA A
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| Protein sequence | MPYWGGTGQE PIGIEHDFAS GIAKELGINI EYKGFDTIEA LLNAVSTGKA DMAIGFGQTL
AREGKFLFSK PLYENVRVIW LRDKAMEEKP FASLKWVCIQ GTSYCEILKD RGYPNIIMAR
NYSSSVEMIR QGIADATVTN YVSLNHYLSQ KRLALGKVIF DPDLGVQTNR ILINNNEPLL
LSAINKVIDA DKQGLTENKL NSADVYFLND QANLNILRNE NVNPVVRYTI QDDLFPMSYW
DEKEKKYKGY VHDLLERIST KSILKFEFVP AYGRDVEDML RHGKVDLIPS FNMTYVDDRY
FIHTGRYTDI QFGYIETTRP YTTPITGILD RTGKFNAYIA VQKNLSDVKV YRSMYDLEQA
LEKGDITHGL LNKVLINQML LDGHQDAFKL SPLTEGQDLR ADMTMLVRKD ARGLQNMLQK
VLATFSQQEI DEIKGAYDRV TVYFGYDKQK VLIYALIILC GLLSIGLILT LSLSRLRGKL
RSSEQVAKLS TEQLRWLTEL LDAIPSMIFI SDEKDEVVLT NAAYRKIYHT CCEKGCVQPQ
PECSFLALPD QHEAEFSIII QAPKSNCSIG EHYFHVTRRA ISHPINQRKY YLTLFNDITE
LKETEQALRQ SNEQALQAVE ARNHFLAVVS HELRTPIAAM LGLMEILASR LKNSESQLLL
TNAISSAERL KLHVNDILDF SKIEAQQLQL DIGLYNLTDE LGPLLRGFEA SAQLKEIEFD
VIWSPNSLLL ANFDALRFNQ IVTNLLSNAI KFTDQGRVVF KIDVAPEMLT IVVEDTGCGM
TQTQIESLFV PFAQADSTIT RRFGGTGLGM SIVANLIELM NGKIEVKSEF EQGTQIQVNL
PLVTQTCDEF RGQVVAMSYR SPYMLWAKAL GMRVEENEEW VEQSGHNIYP DLLLNRLREV
SNLTQAQTEP AHSRLLQGHV LVADDDAINR LLIKKQLSEL GLSATLVSDG LQAFEKLSQH
PEQYDLLITD CHMPHLDGFA LTRKVKQEIS LFKGAVVGCT AEDSRLAAEQ ALQAGMDKVI
YKPYTLANLR KVLSRYLTTQ WVALPEQSWL DAYQEEEREE MAMVVAESLA QDIALLNQPD
CDVKALAHRI KGAAGSLQLQ RLADLAKTVE KQNDPQQLVA DKQQLINAMH EVVEQAQQWL
HQYQSE
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