Gene VC0395_A1253 details

Gene Information

• Locus tag: VC0395_A1253
• ID: 5135392
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1325313
• End bp: 1327226
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640532711
• Product: hypothetical protein
• Protein accession: YP_001217197
• Protein GI: 147675106
• COG category: [R] General function prediction only
• COG ID: [COG4533] ABC-type uncharacterized transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.00065566
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCTCCGCA TTACACCGTT TTACGCAGAA AATTGGGAAT TTCGCACTGA GAAGTCGAGA 
AATGAGGAAC AAACCACCCG TAGGTTTTCA CCATTAACTC CACCTTTTTT CACTACAATA 
GCCGCAGATG AGCTAAGCGT TGAGGTAACC ATGTCTGATC TCAATTTATT GCGCTATTAC 
GCTAGGCTGA CTCCCTTGGG TGTGGGTCAC GATATTAAAA CCACTTTGCC TGAACTGGCG 
GAGCGACTGT TTACGAGTCC TCGTCACGCA AGAAATTTGC TGGTGCGTTT GAATCAATTG 
GGTTGGTTAA CTTGGACACC GAAGGCAGGA CGACATCACC GCTCTTCATT ATTACTGCAC 
AGAGAACTTG AGCCACTCAA GGAGCAACTG GCGGCCAAAC GAGTACAGAT CGGTAAATAC 
GAACGAGCAT TAGCGATTTT AGATAACGAT GAGGTCGCTT TTGCCAAACT GTTAAAGAAA 
ACGTCTGGTG CTACGGTACA AGAAGGACGG CTGCATATTC AGCTCACTTA TAAGCGTCCA 
TTTGAACCGC TGCTGCCCCA TCTTCCTCAG CGAAGTAGTG AGCGTTTTTT GATCCGTCAG 
ATCTACAGTT GTTTGGTCAG CTCTGATGCT AATGGCCATG TACACCCCGA ACTGGCGCAT 
CATTGGCATT ATGATCCGCA CACTTGGCAA TGGACGTTTT ATCTGCGACC CGAATTAACC 
TTTCATAATG GTGCGCCGCT GGATGCCAAT ACCATTGTCA GCCTGTTTGC TAAACTCTCT 
AGTCTAGAAA CACACCGTGC AGAGCTGGCA CATATTAGCG ATATTAAAGC GCCAACCCCT 
TTTCAAGTGG TATTCAACTT AGAGCGCCCA GATCCGGGAT TTGCAGGGAT GATATCTGGC 
GTGAAATACG CCATTCAACC GGTCAGTCAA TTGAATTACA GCCAATTTCA TGAAGGACAA 
ATTGTTCCTG TGATAGGTTG TGGCCCTTTT GAAGTTCAGG AACACACCCG CAATAAACTC 
AAACTCAAAG CATTCAGTCA ATTCTACGGC TGTCGAGCCT TGACCGATCG TGTGACCATT 
TGGCAAGTCG ATGAGGAGCG TTTAAGTCGC CCACTCATTG AAACTAATCA GCCGGAAGCC 
AATACGACCA GCCATCATCA AGTCTCACTA TCAGACTCGC CTCATTTAAC CTCTGCCGCC 
CAACAGCAAA GCCGCGTCGA AGATGGGTGT TTAATGGTGC TGTTTAACCA GAGAGCCAAG 
CAACCGTTGG ATCAAGCTCA AGCACACCGA CTCAGCGAGC TACTCAATCC AAACACGATT 
GAGCAAGATA TTCGCTGTCA CGGAGAGATG TTTGGCGTCG AACCCGCGCA CAACTTGCTG 
CCAAGCTGGC GCGCTGTGTT GAAATCTCCA GCTCCGAAAG TTGCGCTTCC CACGCAGTTG 
ACCTTGGCCT TGTACAACTA CACCGCATTA CAGACCTGTG CCCAAGCGAT TGCCAGATTG 
CTTGCAGCTC AAGGCATTAC ATTAAGCATT CACACTTACA CTTATCGGGA ATTGAATCAA 
CGTGCGCTCA AGGGCGAGCT GGATGAAACC TTGGTACTGA CCAACATTAA TTTGGATGAC 
AACCGCCACG CTTCCGCTTT TGCTATGTTA TTCAGCAACC CGATTCTGCA TGCGTGCGCC 
AGCCAAGATG AGGTGATATG GCTGATGCAG CAATTAAATG CCGTACGTGA GCAAGCGCAA 
TTACCTCAAT ATCTCGATCA ACTGGAGCCG ATTGCTTCAC TTCTGGTCAG TGAATCTTGG 
CTGGCGCCTC TTTTCCACCA TAGACAAACC TTGCGTTTCC ACGGTGTATT ACATGATGTT 
GCGCTCACCA ACTGGGGTTG GCCGGATATT CGCAATGTGT GGTCGGCGGA CTAG 

 

Protein sequence

MLRITPFYAE NWEFRTEKSR NEEQTTRRFS PLTPPFFTTI AADELSVEVT MSDLNLLRYY 
ARLTPLGVGH DIKTTLPELA ERLFTSPRHA RNLLVRLNQL GWLTWTPKAG RHHRSSLLLH 
RELEPLKEQL AAKRVQIGKY ERALAILDND EVAFAKLLKK TSGATVQEGR LHIQLTYKRP 
FEPLLPHLPQ RSSERFLIRQ IYSCLVSSDA NGHVHPELAH HWHYDPHTWQ WTFYLRPELT 
FHNGAPLDAN TIVSLFAKLS SLETHRAELA HISDIKAPTP FQVVFNLERP DPGFAGMISG 
VKYAIQPVSQ LNYSQFHEGQ IVPVIGCGPF EVQEHTRNKL KLKAFSQFYG CRALTDRVTI 
WQVDEERLSR PLIETNQPEA NTTSHHQVSL SDSPHLTSAA QQQSRVEDGC LMVLFNQRAK 
QPLDQAQAHR LSELLNPNTI EQDIRCHGEM FGVEPAHNLL PSWRAVLKSP APKVALPTQL 
TLALYNYTAL QTCAQAIARL LAAQGITLSI HTYTYRELNQ RALKGELDET LVLTNINLDD 
NRHASAFAML FSNPILHACA SQDEVIWLMQ QLNAVREQAQ LPQYLDQLEP IASLLVSESW 
LAPLFHHRQT LRFHGVLHDV ALTNWGWPDI RNVWSAD