Gene VC0395_A1236 details

Gene Information

• Locus tag: VC0395_A1236
• ID: 5136489
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1307421
• End bp: 1308104
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640532694
• Product: ABC transporter, ATP-binding protein
• Protein accession: YP_001217180
• Protein GI: 147673170
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.0708266
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGGTT CGATGTTACA GCTAATAGAC CTATGCAAAG GCTATGTAGA TGGTGATGAA 
TTTCATCCCG TTTTGCAGGG AGCTGAGTTG ACGTTGAACC AAGGTGATCA GCTGGCGCTC 
ATGGGCGAGA GTGGCTCTGG TAAAAGTACT CTGCTGAACT TGATCGCTGG TCTGGATAGT 
GCTGACTCGG GGGAAATCTG GTTTCCCGGA TTTCCCATGC ATCACACTTC TGAGCATCAT 
CGCACGGCAT TTCGTCGTGA CAATATTGGC CAAATCTTCC AGCAATATAA CTTGCTACCC 
ACACTCAACA TTGCCGATAA CATTCGTTTC TGTCGTCAAC TGAAAGGCTT ACCTGAAGAT 
GCTGGTTTGT GGCGACAAAT TCTGTCGGCT CTCGATCTCA TGCCTTTGCT GGGTCGCTAC 
CCTGAAGAGG TGTCTGGTGG TCAACAACAA AGAGCGGCGA TTGCGCGCGC TTTGTATATG 
GAACCGAAGA TTTTACTTGC GGATGAGCCG ACCGGCAGCT TAGATGAACG CAATGCCGAG 
GCGGTAATGC GCTTGCTCAC GACTCTGACT CGTCAGCTCA ATTGTGCCTT GCTTTTGGTG 
ACGCACAGTG AAAAAGTTGC GCAGCACATG GATGGCTGTA TTCGTCTGCA AGGAGGACAG 
CTGCATGTTA TGGCCCGTAG TTAA 

 

Protein sequence

MSGSMLQLID LCKGYVDGDE FHPVLQGAEL TLNQGDQLAL MGESGSGKST LLNLIAGLDS 
ADSGEIWFPG FPMHHTSEHH RTAFRRDNIG QIFQQYNLLP TLNIADNIRF CRQLKGLPED 
AGLWRQILSA LDLMPLLGRY PEEVSGGQQQ RAAIARALYM EPKILLADEP TGSLDERNAE 
AVMRLLTTLT RQLNCALLLV THSEKVAQHM DGCIRLQGGQ LHVMARS