| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1230 |
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| Symbol | nspC |
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| ID | 5136363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1296301 |
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| End bp | 1297464 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640532688 |
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| Product | carboxynorspermidine decarboxylase |
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| Protein accession | YP_001217174 |
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| Protein GI | 147673110 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00000654114 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAACAT TGCAGGATAT AGGAACAAAC ATGCTAAAAG ACGAATTGAG AACCCCATAC
TTCATGATTG ATGAAGCAAA ACTCATCGCT AACCTAGAAA TTGCTAAGCA CCTGAAGGAG
ATTTCGGGTG TGAAGATGGT GTTGGCACTG AAGTGTTTCT CAACTTGGGG TGTTTTTGAC
ATCATCAAAC CCTATCTGGA TGGCACAACC AGTTCGGGTC CGTTTGAAGT AAAACTAGGC
TATGAAACTT TCGGTGGTGA AACTCATGCT TACTCAGTAG GTTACAGTGA AGAGGATGTA
AAAGAAGTCA TTGATATTTG TGACAAAATG ATCTTCAACT CACAATCGCA ACTGGCCGCT
TATCGCCATC TTGTGGAAGG CAAAGCATCG CTAGGTTTGC GTATCAACCC CGGCGTCAGC
TATGCAGGTC AAGACCTTGC TAATCCCGCG CGTCAGTTTT CGCGTTTAGG GGTACAGGCC
GATCATATCG ATGAAAGTGT CTTCGATTCG ATTAATGGCG TGATGTTCCA TATGAACTGT
GAAAATAAAG ACGTTGATGC CTTTATTGGC TTACTGGATG CCATTTCCGA ACGTTTTGGT
CGTTATCTCG ATAAATTAGA CTGGGTGAGT TTAGGTGGGG GCGTCTTCTT TACTTGGCCA
GGTTACGATG TTGAGAAATT GGGCGCAGCA CTGAAAGCGT TTGCTGAGCG TCACGCTGTT
CAGCTCTATC TTGAACCGGG TGAGGCGATC ATTACCAAAA CCACGGATCT TGTGGTGACA
GTGGTAGACA TTGTGGAAAA CGGGATGAAA ACCGCGATTG TCGATTCCGC AACGGAAGCG
CACCGCTTAG ATACGCTGAT CTATAAAGAG CCTGCATCGG TGTTGGAAGC CAGTGACAAG
GGACAGCACG AATATGTTAT TGGCTCTTGT TCTTGCTTAG CGGGCGATCA GTTCTGTGTG
GCTAAGTTTG ATGAGCCGCT TCAGGTCGGG CAGAAACTGC ATATCCTGGA CAGCGCGGGT
TACACCATGG TTAAACTCAA TTGGTTCAAT GGCCTGAAAA TGCCGTCGGT TTATTGTGAG
CGCAAAAATG GTCAAATCCA GAAGATCAAC CAGTTTGGCT ATGAGGATTT CAAACGCACC
TTATCTTTAT GGTCAATTGA GTAG
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| Protein sequence | METLQDIGTN MLKDELRTPY FMIDEAKLIA NLEIAKHLKE ISGVKMVLAL KCFSTWGVFD
IIKPYLDGTT SSGPFEVKLG YETFGGETHA YSVGYSEEDV KEVIDICDKM IFNSQSQLAA
YRHLVEGKAS LGLRINPGVS YAGQDLANPA RQFSRLGVQA DHIDESVFDS INGVMFHMNC
ENKDVDAFIG LLDAISERFG RYLDKLDWVS LGGGVFFTWP GYDVEKLGAA LKAFAERHAV
QLYLEPGEAI ITKTTDLVVT VVDIVENGMK TAIVDSATEA HRLDTLIYKE PASVLEASDK
GQHEYVIGSC SCLAGDQFCV AKFDEPLQVG QKLHILDSAG YTMVKLNWFN GLKMPSVYCE
RKNGQIQKIN QFGYEDFKRT LSLWSIE
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