| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1217 |
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| Symbol | |
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| ID | 5137097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1280465 |
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| End bp | 1281178 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640532675 |
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| Product | putative fimbrial biogenesis and twitching motility protein |
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| Protein accession | YP_001217161 |
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| Protein GI | 147675083 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.544829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATG TGTTTGGTTT AGGGCTCATA ATCGCCTTAG CAGGCTGCGT CACCGTCACT
GAAACGGCGG GTAACGCAAC GCAAAGTGAC CCAACTGAGA TGGCAGAGGC GCGCATTGCC
CTTGGTTTAG GCTATTTAGA AAATGGCAGC ATGATCAAGG CACGGGAAAA TTTAGAAAAA
GCACTACAGC ATGCGCCGGA TTATTACCGC TCACAACTTT CAATGGCGCA CTATTATGAG
GCTGTTGGTG AAAATGATGC TGCGCGGAAA ATGTACCGCA CGGCACTAAG CGAGCACCCG
AAAAACGGTA ATGTGCTGAA TAACTTCGGT ACCTTTTTGT GTAAGCAAGG CGAGTATGAC
ACGGCAGATC AATACTTTCG CCGTGCGGTC GAGCAACCTT ATTACTACTT AATTTCAGCC
AGTTACGAGA ACGCCGGATT GTGTGCTCTC AAAGCAGGGA AAACGGACAA CGCTCGTGAA
TATTTCAAAC GTGCTATCGA TCACGATCCA AATCGTCTGC TGTCCATTTT ACAGCTGACT
AAAATGGAGA TTGAAGCCGG CGACTACACA CCCGCTCGCT TACGTTTAAT GGACTTGAAT
CAGCGTTATG GCTATCAAAA AGCCTCACTC AAACTACTGA TTGAATTAGA AAAACGCGCT
GGGAATTCTG CGTTAGAGCA AAAATATCAA ACCCTATTAA ATTCTCTCTC TTAA
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| Protein sequence | MKNVFGLGLI IALAGCVTVT ETAGNATQSD PTEMAEARIA LGLGYLENGS MIKARENLEK
ALQHAPDYYR SQLSMAHYYE AVGENDAARK MYRTALSEHP KNGNVLNNFG TFLCKQGEYD
TADQYFRRAV EQPYYYLISA SYENAGLCAL KAGKTDNARE YFKRAIDHDP NRLLSILQLT
KMEIEAGDYT PARLRLMDLN QRYGYQKASL KLLIELEKRA GNSALEQKYQ TLLNSLS
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