| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1172 |
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| Symbol | |
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| ID | 5137297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1232923 |
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| End bp | 1234200 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640532630 |
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| Product | hypothetical protein |
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| Protein accession | YP_001217118 |
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| Protein GI | 147675463 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.811574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCCAA TAAGACAAAT TATGCAGGAA ATGGCGGCCG AAAAGCTCAG ATTGAGCCTC
ACTATTTTGG CCGTTGCGTG GTCAACCTTA TGTATCGCAG GGCTACTTGC GGTCGGTGAA
GGGATCCGTA GTGGAATTGT ACGCACCATC CAAAATGGCA ATGGTAACCT AATTCATGTC
AGCGGCGGTT ATGCCACGCA AACCCATGGC CGTTTTCATG AGGGGCAAGC ACTTTCTCTC
ACCGAGCAAG ATAGCCAAGT CTTGGCCGCT CTGCCTATGG TCAAACACGC ACTTCCTTCG
GCCGAGTGGC AAGAGCTGAT CACGTTTGCA GATAAGCGTT CATGGATGAT GCCTTACGCG
GTGAAAAGTG AGTATCAGGC GATGAATAAA CTGCGATTGT TACCCGGCGG GCGCTGGTTT
AATCCCGTTG ATGAAACACA GCAACGTAAA GTGGTCGTCC TCGGTTATCA ACTCGCGGTA
CAACTGTTTA ATCAGCAAGA GGGCGACTGG TTTAGCGGCG GCGAGTTAGA GCAAGATCCT
GTCGGTCAGA TTGCCAAAAT AGGCGCACAC GAATTTACGG TGATCGGAGT GCTGGCCAAA
AACAGCGGCA ACATTGAGCA GGGTTCACCT ATTGATTACA GTGGTTTTAC GCCATTCAGT
ACTTGGCAGC GTTTTCACCC CAACCAAGCG ATCAGCGGAA TTAATCTTGA ACCGAGGGTG
GGCAGTGACC GTCAAGCGTT GGCAGCCACG GTACAGCAAG TGTTAAAACG CAAATACGCC
GCGAGCTTGC AAGATCAGCA AATTGTCATG GTGCAAGACC ACTTTTTGAG CCAGAAAAGT
ATGCAGCAGT TTCTGCTGAG ACTACAAAGC TTCCTTGGCA TTATTGGGTT TATCACTTTA
GCCGTAGCAA GTTTAGGCAT TACCAATGTG ATGTTTGCTA CCGTGAAGCG GGCCACACGC
GACATTGGCG TACGCATGGC TGTAGGTGCA ACCCCCAATA CCATTCGCTG CCACTATTTG
GCTCAATCTT TGATCACGAT GGGATTGGGA GGAATTGCCG GCTTAGGTGT GACATGTGCG
ATGGTTCGCC TACTCGCCGC CATTCCTTTA CAGGGCAATC CGATTTATGA CCACTTAGGC
CAACCGGTTC CAGAGCTGTC GCTTAGCGTC ATTGTGATAG TGATTGTCAC CCTTACCGTG
ATGGGCATTG TTGCTGCTTG GTTACCCGCC AATCACGCAG CAAAAGTGAC ACCGTTACAA
GCATTACAGA GTGAATAA
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| Protein sequence | MLPIRQIMQE MAAEKLRLSL TILAVAWSTL CIAGLLAVGE GIRSGIVRTI QNGNGNLIHV
SGGYATQTHG RFHEGQALSL TEQDSQVLAA LPMVKHALPS AEWQELITFA DKRSWMMPYA
VKSEYQAMNK LRLLPGGRWF NPVDETQQRK VVVLGYQLAV QLFNQQEGDW FSGGELEQDP
VGQIAKIGAH EFTVIGVLAK NSGNIEQGSP IDYSGFTPFS TWQRFHPNQA ISGINLEPRV
GSDRQALAAT VQQVLKRKYA ASLQDQQIVM VQDHFLSQKS MQQFLLRLQS FLGIIGFITL
AVASLGITNV MFATVKRATR DIGVRMAVGA TPNTIRCHYL AQSLITMGLG GIAGLGVTCA
MVRLLAAIPL QGNPIYDHLG QPVPELSLSV IVIVIVTLTV MGIVAAWLPA NHAAKVTPLQ
ALQSE
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