Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0370 |
Symbol | |
ID | 5136170 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 397351 |
End bp | 401682 |
Gene Length | 4332 bp |
Protein Length | 1443 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640531828 |
Product | putative lipoprotein |
Protein accession | YP_001216326 |
Protein GI | 147673383 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTCTCA TATTTCAAAT ATCACAAAAA GATAATGTCT TTTGTACGAT CAACGGGCGT TCAATCGCAA CATTTACCGC TCCCTTTGAC GCTAATAAAA ATGGCCGTAA CACTGATTCT GAAGTTTTAT CTTTAATCTC TGCGGATGAG TACCGGGACT CGCCAGTTCG ACAGGAAAAT CTCCAAATTT TAATGAAAAA TATGGCGACA ATACATGGAG ATAAAATATC TCTAGTTTTC CGAAGTACTC TTGATGCCTT GACATTCGAA AATTATTTAC GGCACAATTT AGATCTTCCC AAAGACCAAT TTTTAGAAGC AATTACAGAA AAAATCGCCA ATGATAATCA GGTCGATAAG CAACCTTCAA CTCATGTGCC TAATATCTCT CCATCATTCA CGCCTGGGAC TTCATCTAAT TTGAATAGTC CATTCGTTTC TGCTAATGCT GAAGAGTCTT TGAGCTATAT ACCGACAGAT GTTATTCCTT CGCTTGGTCG CTTACTTGAT AGTCAAGGTC GAGTTATTAA TGGTGTTTCA TACTTCAGTA ATAATACTCG TGGTATTACT GGTGTAGATA AAACAGGGGC TATTTTAAAT GATGGTTCAT TTGAATTTTC GTGGGGAGAT ATTATTAGCT TTTCAATCGA TACATTTGAA TTAGGTAGTA CTCGAGCTAA TAAAACTGAT TTTTATATCA GTGAATTAGG TAAGGACAAT GAGGGTAAGA ATGCTGAAGC TTTGATTCAT CGTTATGCAA GTATTGATGA TTCTAAGCTT ATCATTCCAG ATAAAGTTAC GCAGATTTTT TCCCTATACC CTAATGTCAT TAATGAAGTG ATTTCATTAT CATTACCTAA TGGCGATATC GAACTTGATA TTGGAGATGG TAAAACTCAG ATTGTACCTG GTGAATTCTT TAAGCAGTTT GATTCTGGAT TAGCAGCACT TATCGATCAA TCTATTTCAC CTATATCGAG GTTCAAATTT GAAGACAGTT TGCCTAAGAA AAAGTCAGCA ATTGATTCTG AATCTTCACA AATCCAAGAT ATTATTAATA AACTCTGGGG TGCAACCGAT ACCGTACAAG CTAATGGATG GAAAAAAGTC GATCGTTTTC ATATTTTTCA TGACAGTACA AACTTCTACG GTAGTACAGG AAGTGCCCGA GCACAAGCAG CGGTGAATAT TGCTAATAGT GCATTTCCAG TCTTAATGGC TCGTAATGAC AATAATTACT GGATTGATTT TGGTAAACCT AAAGCATGGG ATTCGAATAG TCTGGCATTT ATTACTGAAG CACCTTCTAC AGTTGTGCCT GATAAAGTAT CTGAAGATAC ATCAACCTTT AATTTACCTT TTATTAGTTT GGGCGAAATT GGTAAAGGCA AGCTGATGGT ACTAGGAAAT GCGCGATATA ACAGTGTCTT AGTCTGTCCT AATGGATTTA GTTGGGGCGG AACTGTTAAA AATGGTACTT GTAGCTTAAG TAGTGATCGT GATGATATGG CTAATTTTTT TAGTAATGTC ATCCGCTATC TTACGGGAAG TACTTCCAAT GATGTTATTG TTGGAACTAA TATTCCAGAA GTTTACTTTA AATCATCTGG CCAAACTATG GGGTCAAAAG CCAATTTTGA ACTCGATTCA AGATTCTCTA AGCAAACTCA ACAGTTGACT AGTTTCCATG ATTTAGATGT TAATACTATA CCTCTTATTA TTATCAATGC ATACGACTAT AAAGGAAAAA ACATAAATAG TCCGTATGAT ATTCCATTAA GTGCTGATGT AGGCAGTCCG AAATTGTCTC GTTCTGATGT CACTGATTTA ATTGATTATA TAAACAACGG TGGTAGTGTA TTAATGATGG AGACTATCAT TAATACAAAT AACAGTGAGA TTTCTCGTTT ATTGGACAGT GCTGGTATTG CTTTTGGCAT TGGAAACAGT GTAGTTGCTG ACGGTAATGG CCCGAGTGGA GGCCACCCAG ATCGCCCACG TAGTCAGCGA GAGCACGGTA TTTGGGTTAT TGAGCGATAT GCAGCTGTTG AAGACGAGTC TTCTGGTCAA CAGACGCTAC CTTATGTGAT TAATAGTGAT GGTTCAATTG AGTGGAAGTA TATTGTAGAG AATAGGCCCG ATGATAAACC TAAACTTGAA GTCGCGAGTT GGGTTGAATC TGAAGCTGGA GATAAATTAA TTACTCACTA TGCATTTATT GATGAGTCTC AGCACTGGAA AAAAGATATT TCAGGTAAAA TAATCTATAA CGTGGCAGGG AAGCCGGAAG TAGATAATGC ATCATTATCT TTGGCTAAAA ATAAAGTACT TGATGCTTTT AAAAACAGTA GTGGCCAGAG AGCCTACTCT GAATGTAAAA ATTCTGAGTT TCATTATGAG ATTAATTGCT TAGAATATCG TCCAGGTAAT TCAATTCCTA TTACTGGTGG TTTGTATGTA CCCCGATATA CTGATATTAA GTTAGGAGAG TCTGAAGCCA ATGCTATGGT AAAGGCGGCT AATCTTGGTA CAAATATTCA TGCTTTATAT CAGCATGAAC GTTATTTCCG AACTAAAGGA AAGTCGGGAG CCCGTTTAAA TAGTGTTGAT TTGAATCGAA TTTATCAAAA TATGTCAGTA TGGCTTTGGA ACGACCTTGA TTATCGTTAT GATGATAAGC AATCCGATGA GCTTGGATTT AAAGTTTTTA CACAGTATTT GAATTGTTAC ACTAGTAACA ACGCTGGTGG TAATACAACT TGCCCAGAAG AATTGAAAGA TGAACTTACT CAGCTAGGTA TGATTTATGA CGAAAAATCA GGAAGCTATG CAGGTCAAAT GGATCCAAGT TACCCACTTA ATTATATGGA AAAGCCACTG ACCCGTTTAA TGTTAGGGCG CTCATTCTGG GATCTTGATA TCAAAGTTGA TGTCAGAAAG TACCCCGGTG AAGTCACAAC AAGATCAGGT GGAGGGGATA TTACTCTTGA CATGCGTAAT AATACGGCAG CTTGGTTTGC GGGTAATAGG CAGCCGACAG GGCAGTGGGC CGAAGCTCAT CAGCCTTTTA GTGTTTCAGT CTCAGGAGAA ACATCGCCTG TCACCATCAC CATTGCATTG GCTGATGATT TAACTGGCCG AGAGAAGCAT GAGCTTGGTT TAAAGCGTCC TCCTCGCATG AGCAAATCAT TTGTTATTGG CGGCGATAGT CCGAAAATGC AGACTTTTAC CGTACCCTAT GGTGGGTTAA TATATGCACA AGGGGGAAAT TCTCAACAGG TCAAACTAAC ATTTTCAGGA ACTATAGATG CACCGCTCTA TATTGACGGT AAGTGGAGAA ACCCTCTTTT ATCTGGCGCA CCAATTGGTG AAGTAGTGTC AGACACCTTC ATATTTACTG CACCTAAAGC AAATTTAAAT GCCGATGGTT ATTTGGGGGG GATCGAACAG TTTGCAAAAG ATCTTGATCA ATTCTCAGCG GATTTAAACG ATTTTTATGC CCGTGATGAA GGTGCGGACG GTGACAAAAA TCGCAAAGCT ACTGATAAGT CAATGCCTAA TAATCGTCAC CATTTCGTCA ATGATGTCGC AATAAGTGTT GGTGCTGCAC ACTCTGGCTA TCCGGTCATG AATGATAGTT TTATTACCAG TAGCCGTAGT TTGAACACTA TGCCGCTGAA CAGCTGGCTG CTTTGGCATG AGGTCGGGCA TAATTCAGCA GAAGCTCCTT TTAATGTTGA TGGGGCCACA GAAGTTGTAA ACAACTTACT TGCCTTATAT ATGCAAGATC GTCATCAAGG AAAAATGTCT CGTGTAGAAC AGGATATCCG TTATGCTTTC GATTTTGTTA ATGCTGAGCA TGGGCATGCT TGGGGAGCCG GTGGTGCTGG TGAACGTTTA GTTATGTTTG CGCAACTTAA AGAGTGGGCA GAAACTGAGT TTGATATAAA TGACTGGTAT AATGATAAGC TACCTGGTTT TTATATTGAA GAAAGCGGAA TAAAAGGTTG GAACTTGTTT AAACTGATGC ATCGGTTAAT GAGAAATGAG AACGATGACC AAATCAATAT GAAGGGAGAA AATCAATGTA AGATATCTGG TATTGGTAAA AGTGATCTAT TAATGCTTTG TGCATCATAT GCCGCTCAGA CGGATTTGTC AGAATTTTTT AAAGCATGGA ATCCGGGAAG TAAGGCATTT CTCTATCCAG ATGATCCTCA GCCATATTAC GAAGGAGGAA TAACTCCTTC TGGGATTCAG AGAGTCAAAT CTTTAAAATT GAATCTTCCC CAAAAAAATC CCCTTTCTAT AAACAGTGTT ACACAACATT AG
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Protein sequence | MPLIFQISQK DNVFCTINGR SIATFTAPFD ANKNGRNTDS EVLSLISADE YRDSPVRQEN LQILMKNMAT IHGDKISLVF RSTLDALTFE NYLRHNLDLP KDQFLEAITE KIANDNQVDK QPSTHVPNIS PSFTPGTSSN LNSPFVSANA EESLSYIPTD VIPSLGRLLD SQGRVINGVS YFSNNTRGIT GVDKTGAILN DGSFEFSWGD IISFSIDTFE LGSTRANKTD FYISELGKDN EGKNAEALIH RYASIDDSKL IIPDKVTQIF SLYPNVINEV ISLSLPNGDI ELDIGDGKTQ IVPGEFFKQF DSGLAALIDQ SISPISRFKF EDSLPKKKSA IDSESSQIQD IINKLWGATD TVQANGWKKV DRFHIFHDST NFYGSTGSAR AQAAVNIANS AFPVLMARND NNYWIDFGKP KAWDSNSLAF ITEAPSTVVP DKVSEDTSTF NLPFISLGEI GKGKLMVLGN ARYNSVLVCP NGFSWGGTVK NGTCSLSSDR DDMANFFSNV IRYLTGSTSN DVIVGTNIPE VYFKSSGQTM GSKANFELDS RFSKQTQQLT SFHDLDVNTI PLIIINAYDY KGKNINSPYD IPLSADVGSP KLSRSDVTDL IDYINNGGSV LMMETIINTN NSEISRLLDS AGIAFGIGNS VVADGNGPSG GHPDRPRSQR EHGIWVIERY AAVEDESSGQ QTLPYVINSD GSIEWKYIVE NRPDDKPKLE VASWVESEAG DKLITHYAFI DESQHWKKDI SGKIIYNVAG KPEVDNASLS LAKNKVLDAF KNSSGQRAYS ECKNSEFHYE INCLEYRPGN SIPITGGLYV PRYTDIKLGE SEANAMVKAA NLGTNIHALY QHERYFRTKG KSGARLNSVD LNRIYQNMSV WLWNDLDYRY DDKQSDELGF KVFTQYLNCY TSNNAGGNTT CPEELKDELT QLGMIYDEKS GSYAGQMDPS YPLNYMEKPL TRLMLGRSFW DLDIKVDVRK YPGEVTTRSG GGDITLDMRN NTAAWFAGNR QPTGQWAEAH QPFSVSVSGE TSPVTITIAL ADDLTGREKH ELGLKRPPRM SKSFVIGGDS PKMQTFTVPY GGLIYAQGGN SQQVKLTFSG TIDAPLYIDG KWRNPLLSGA PIGEVVSDTF IFTAPKANLN ADGYLGGIEQ FAKDLDQFSA DLNDFYARDE GADGDKNRKA TDKSMPNNRH HFVNDVAISV GAAHSGYPVM NDSFITSSRS LNTMPLNSWL LWHEVGHNSA EAPFNVDGAT EVVNNLLALY MQDRHQGKMS RVEQDIRYAF DFVNAEHGHA WGAGGAGERL VMFAQLKEWA ETEFDINDWY NDKLPGFYIE ESGIKGWNLF KLMHRLMRNE NDDQINMKGE NQCKISGIGK SDLLMLCASY AAQTDLSEFF KAWNPGSKAF LYPDDPQPYY EGGITPSGIQ RVKSLKLNLP QKNPLSINSV TQH
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