| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1013 |
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| Symbol | |
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| ID | 5134275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 990851 |
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| End bp | 991930 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640531334 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001215848 |
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| Protein GI | 147672164 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATGA CAAAATCGAC TCACTCTCCT GCTTTTACCG GTTCAGAGTT ACTGAACACT
TACTATCAAC GTCGGGTGTC GCTTTTTATT GGTTTTATTT CTAGTTTGGT TTTCTTTCCA
CTCGCCGTTA AAAACTTGCT GATTGACTAC GTTCTTCTTG GCGGGTTGAT CATCGTATTC
CAATGCACGC TCCTCATTGA AATTACGGCT ATCTATTATC AAAAGAAAAC ACCATGGGGT
TTTAGGCTTC CACTGGCATT GGTGGTAGTC ATCGTGGTGA TGGCTATTCA CATTTTCGGC
ACCCTCGCCA GCTACTGGCT ATTTCCCGTG CTCATTGCGA TTGCTTTTCT ACTCCCCCAG
AAAGATAACT TATTGACCAT CACCATTATC ATTCCAGCCA GCATATGGGT TTTAATTCCC
CATCAAACCG CCGAAGTCAC CTTGCGCTTT AGCCTTGCGA TCAGCGCTTG TGCCGCCATC
ATGTATGTGG TGGTAGATGC TATCCGTAAG CTGCACACTG AGCTTTTTTA TCTTTCCACT
CGTCATGCAT TAACGGGCAC ATTGAATCGT CATCAACTGG ATGGTTTTTT GAAAAAATGT
CTTCGCCACC GCCAGCTCGC CAATGAATCG GCGGTGATCG CCGTGATCGA TATCGATCAC
TTCAAATCTG TTAATGACCT TTATGGACAC GACACAGGAG ATAAAGTCAT TACCCAAGTT
GTTGAAATAA TGAATACTCA CTGCCGTGAG TTAGATCTGT TGTTTCGATT AGGGGGCGAT
GAATTTTTAC TGCTGTTTGA AAATACGTCG TTAACCGACG CTACACTCGT GATGAGTCAT
ATTGGTTGTC GGATTCAACA AACGCACTAC CCATACCATG CCAAAGTCAC CGTCAGTGTC
GGTTTAGCCG AAGCACTTCG CACCGATGAT CCGGAGCAGT GGTTCAAACG CGCAGACCAA
GCTCTCTATC ATTCGAAAAA AATGGGGAAA AACCGCGTCA GCTTCGATGA AGAGCATGTC
ATTGAACTCA ATGGTGACCA TTGTCATGCG CTATTGGGTT CAACTCATGG TCATCGCTGA
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| Protein sequence | MTMTKSTHSP AFTGSELLNT YYQRRVSLFI GFISSLVFFP LAVKNLLIDY VLLGGLIIVF
QCTLLIEITA IYYQKKTPWG FRLPLALVVV IVVMAIHIFG TLASYWLFPV LIAIAFLLPQ
KDNLLTITII IPASIWVLIP HQTAEVTLRF SLAISACAAI MYVVVDAIRK LHTELFYLST
RHALTGTLNR HQLDGFLKKC LRHRQLANES AVIAVIDIDH FKSVNDLYGH DTGDKVITQV
VEIMNTHCRE LDLLFRLGGD EFLLLFENTS LTDATLVMSH IGCRIQQTHY PYHAKVTVSV
GLAEALRTDD PEQWFKRADQ ALYHSKKMGK NRVSFDEEHV IELNGDHCHA LLGSTHGHR
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