Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0983 |
Symbol | sgaT |
ID | 5134872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 959025 |
End bp | 960785 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640531305 |
Product | PTS system ascorbate-specific transporter subunits IICB |
Protein accession | YP_001215819 |
Protein GI | 147672271 |
COG category | [G] Carbohydrate transport and metabolism [S] Function unknown |
COG ID | [COG3037] Uncharacterized protein conserved in bacteria [COG3414] Phosphotransferase system, galactitol-specific IIB component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 49 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGTTCT TGTACGACGT TTTCTATATT TTTTACAGCC AAGTAATGAC CAAAGCCCCT TTGCTGCTAG GGCTAGTCAC CTTAATCGGC TATTGGCTGC TAAGACGCGA TGCGACAACC ATCATTAAAG GTTCAATCAA AACCATTGTC GGTTTTATGC TGGTACAAGT GGGCGCAGGC ACACTGGTCG CTGGCTTTAA ACCTGTGATT GAAAAGCTGT CGCAATACCA CGGTTTAACC GGATCAGTGA TTGACCCCTA CACCTCGATG ATGGCCACCA TGGAAACCAT GGGCGACAAC TATTCATGGG TCGGGTACGC CGTGCTGCTA GCACTGGCGA TCAACATTCT GTTGGTGCTG TTTCGCCGCT ACACCGGCAT TCGTACCATC ATGCTGACTG GACACATCAT GTTCCAGCAA GCGGGTTTGA TTGCGGTGTT CTACTTTGTG CTCGGCGCTG GCATGTGGGA AACCATCATT TATTCGGCGG TATTGATGGC GCTCTACTGG GGCATCTCTT CTAACATCAT GTTCAAACCG ACCGAAGAAG TCACTGGCGG CGCGGGTTTC TCCATCGGCC ACCAACAGCA AGTCGCTTCA TGGATCGCCA CCAAAATCGC TCCCAAACTG GGGGATAAAA AAGACAGTGT TGATCACCTG CAACTGCCTA AATGGCTGCA TATTTTCCAC GACAGCATCG CTGCCACCGC GATTGTGATG ACGGTGTTCT TCGGCATCAT TCTGCTCTCT TTCGGTCTGG ATAATCTGCA AGAGATGGCG GGCTCCACCC ACTGGACTAT CTACATCCTC GAAACGGGCC TTAAGTTTGC CGTCGCGATC CAAGTGATTG TGGCCGGTGT ACGTATGTTT GTCGCCGAGC TGTCTGAAGC GTTTAAAGGC ATCTCCGAGC GCGTTATTCC TAATGCTGTG CTCGCGATTG ACTGTGCGGC GATCTACGCC TTCTCTCCCA ATGCCATGGT GTTTGGCTTT ATGTGGGGCG CACTCGGCCA ATTTGCAGCA GTCTTAGCCA TGCTGGCGTT TAATGCGCCA ATCATGATCA TCCCCGGCTT CATTCCTATG TTCTTCTCCA ACGCAACGAT TGGCGTCTTT GCGAACCATT TCGGCGGTTG GAAAGCGGTG ATGAAGATCT GTTTTGTGAT GGGCATTATC GAAGTGCTCG GCTCTGCATG GGCAATTCAC CTCTTCACCC AACAAGGCAC CGAATTCAGC GGCTGGATGG GCATGGCCGA CTGGGCTTTG GTCTTCCCAC CGATTATGCA AGGTTTGTCC GCCTCGAAAC TCTTCTTCTT CGTACTGGTT GCCCTGGCGT TGGTCTACAT GTTCTTTGCT TCCAAACAGT TACGCGCCGA AGAAGATGCA CAAGGTAGTA TCACGGTCAG TGACGAGCCG GAAGTGATTG AAGCGGTTGA ACAAGCTCTA CAAGCTGCGC AAGGCACTCG TCCAGTGAGC ATTCTGGCAG TGTGCGGTAA CGGCCAAGGT TCATCGATGA TGATGAAGAT GAAAATCGGC AAGTATCTGG AGCAAAAAGG CATTCCACAC GTGATGGATT CTTGCGCGGT GTCTGATTAC AAATCCAAAC TCGCGACCAC CGACATCATT GTCTCCTCGA AACACCTCTC AGCCGAGATG GAACCGGGCG AAGGCAAGTT TGTGCTCGGG GTGCAGAACA TGCTGAACCC GAATTCCTTT GGCAATGAAC TGCTCGACAT TATCCATAAC CATTTTGTGA AAATTCGCTA G
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Protein sequence | MEFLYDVFYI FYSQVMTKAP LLLGLVTLIG YWLLRRDATT IIKGSIKTIV GFMLVQVGAG TLVAGFKPVI EKLSQYHGLT GSVIDPYTSM MATMETMGDN YSWVGYAVLL ALAINILLVL FRRYTGIRTI MLTGHIMFQQ AGLIAVFYFV LGAGMWETII YSAVLMALYW GISSNIMFKP TEEVTGGAGF SIGHQQQVAS WIATKIAPKL GDKKDSVDHL QLPKWLHIFH DSIAATAIVM TVFFGIILLS FGLDNLQEMA GSTHWTIYIL ETGLKFAVAI QVIVAGVRMF VAELSEAFKG ISERVIPNAV LAIDCAAIYA FSPNAMVFGF MWGALGQFAA VLAMLAFNAP IMIIPGFIPM FFSNATIGVF ANHFGGWKAV MKICFVMGII EVLGSAWAIH LFTQQGTEFS GWMGMADWAL VFPPIMQGLS ASKLFFFVLV ALALVYMFFA SKQLRAEEDA QGSITVSDEP EVIEAVEQAL QAAQGTRPVS ILAVCGNGQG SSMMMKMKIG KYLEQKGIPH VMDSCAVSDY KSKLATTDII VSSKHLSAEM EPGEGKFVLG VQNMLNPNSF GNELLDIIHN HFVKIR
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