Gene VC0395_0603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0603 
Symbol 
ID5134059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand- 
Start bp656889 
End bp657512 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content48% 
IMG OID640530925 
ProductOmpA family protein 
Protein accessionYP_001215442 
Protein GI147672308 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones51 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTGAGA TGAAATTCTG GGTGTTGTGC GTGACGTTTT TGCTAACAGG ATGTGGTTCG 
CTGGTGACTG ACCGCATGTT TAACGACAAT CTGCTCGATG TTGCCCCGAA AGGCGATTTC 
GATGTGCGTT ATCCAGAGTG GGGTTACGCA CCGCAAAAGA ACACCAGTGT GATGTCCAAT 
GCAATGACCC AGCAGCGTTC GGCCAGTTAC GAAGATTTAC GTCAGTATTT ATTGAGTAAC 
GGCATTCAGC ATGAAGTGGT GCCGGGTGAC TACCCGATGA TTAAGTTGAA CAATACCGTT 
CGGTTTGAAA CAGGTTCAGC GAAAGTCTCT ATGGCTTCCA AACAATGGTT AGACACGGTC 
GCTCGATTTC TCGCTACCGA GTCAGGGATT GATATTGTAC TCGAAGGGCA TACGGATAAT 
ACCGGTTCAG AGAAACTGAA CGACAAGTTA GCCGAGCGAC GGGCCAATGC GGTCAAAGCG 
GCTTTAGTAC AGAGTCGAGT GGCACAAAAT GCCATTTACA CTCGTGGATT TGGTGAGAAT 
GTTCCTGCGT GCACCAACAG TACTAAGAAT GGCCGAGCAT GTAACCGCCG AGTAGAGATC 
CGTTTCATCC TCGCGTCTAA TTAA
 
Protein sequence
MFEMKFWVLC VTFLLTGCGS LVTDRMFNDN LLDVAPKGDF DVRYPEWGYA PQKNTSVMSN 
AMTQQRSASY EDLRQYLLSN GIQHEVVPGD YPMIKLNNTV RFETGSAKVS MASKQWLDTV 
ARFLATESGI DIVLEGHTDN TGSEKLNDKL AERRANAVKA ALVQSRVAQN AIYTRGFGEN 
VPACTNSTKN GRACNRRVEI RFILASN