| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0582 |
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| Symbol | |
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| ID | 5134432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 633197 |
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| End bp | 636400 |
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| Gene Length | 3204 bp |
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| Protein Length | 1067 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640530904 |
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| Product | AcrB/AcrD/AcrF family transporter |
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| Protein accession | YP_001215421 |
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| Protein GI | 147671986 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATGTGGT CGCTACACAG GCCGTCACAG CAAAAGGTGA ATGATATGGA AAGTCGACTC
GGTATTTCGG GTCGCATCGC TGCGGCCTTT CAAAATTCAG CCATGACACC ACTGCTTGCC
TTAGTCGGTT TGCTGATGGG GCTATTTGCG GTCATGGTGA CGCCGAAAGA AGAAGAGCCG
CAGATTGATG TGACGTTTGC GGATGTCTAT ATTCCGTTTC CCGGCGCTTC TCCTCGTGAA
GTGGAAAGTT TGGTGACAAC GCCAGCAGAG CAGGTGATCT CTGAGATTGA AGGGATTGAT
AAAATCTACT CATTCTCTCA ACCGGATGGC GCGATGATCG TTGCCATTTT CAAAGTGGGT
GTGCCACGTA ATGATGCGGT GGTGCGCATC TACAACAAAC TCTATTCCAA TAAAGATTGG
ATGCCGCAAG GCGTTGGCGT GGGTGAGCCC ATTATCAAAC CGAAAGGAAT TGAAGATGTG
CCGATTGTCA CCATCACCTT GGCGGATAAA AGTGATCGCT TCGATCAGCA GCAACTGACG
CAAGTGGCGC ACGGTTTAGA AACCGAGCTC AAGCGCATTC CCGGTACACG CGATATTTAT
ACCATCGGTG GGCAGAACAC CATTGTCGAT GTTCGACTGG ATCCCGCCAA AATGAACGGC
TTTGGCATCA CCTTAGATCA ACTCAATCAA AGTCTGCCGG CGGCGAATCA AAGCTCACCG
ATGCTGCGTT TAACCCATGA TAACCAAGAG TTCCCGGTGC AAGTTGGCCA GTTTTTAACT
CGGGTGGAAG AGGTCAAGCA ACTGGTGGTT GGGTTACATA ACGGTAAGCC TGTTTATCTG
GAAGATATTG CGAGCGTATC CTTTGGGGTT AACACGCCTA CTCAAAATGT GTGGACAGGC
GATCGTGACG GTATTCATCC TGCGGTCACC ATTGCGATTG CTAAAAAAGG CGGGGAAAAC
GCGGTCGATG TCGCTAGAGC GGTGGAAGCG CGTTTAGTCA GCCTTGAAAA TCAGCTGATC
CCACAAGGAA TTGATGTCGA TATTACTCGC GATTACGGGC AAACTGCCGC CGATAAAAGC
AATACCTTGA TGGGGAAACT CGCTTTCGCG ACGACCGCGG TGGTGATTTT GGTGCTGCTG
ACCATGGGCT GGCGTGAAGC GCTGGTGGTC GGTATGGCTA TCATTGTCAC CCTGATGATT
ACCCTATTCG CCTCTTGGGC ATGGGGTTTT ACACTCAATC GTGTGTCGCT GTTCGCGTTG
ATTTTCTCCA TCGGTATCTT GGTCGATGAT GCGATTGTGG TGGTCGAGAA CATTCACCGG
CATATGGCGA TGGGCAAACG CAAGTTGTCG GAACTCATTC CCCCTGCGGT AGATGAAGTC
GGTGGGCCAA CCATTCTTGC TACCCTAACT GTTATTGCTG CCTTGTTGCC GATGGCGTTT
GTGTCGGGTT TGATGGGGCC GTACATGAGC CCAATTCCAA TCAACGCGTC AATGGGCATG
CTGATTTCTC TGGCCGTGGC TTTTGTGCTT TCCCCTTGGC TGGCGGGTAA ATTCCTTAAG
GCTGGGCATC ATCAAGAAGA AGGCAAAGCG GCGAATGGCA TCTTCCACAA AATCATGTCG
CCGTTTGTCA CTGCGCCAAA GCAGGGGCGT AACCGGCTGT TTTTGCTGTT GACCATTTTG
GCGCTGATTG CTGGTTCCGT ACTGCTGCCT GTGTTCCAAG CCGTGGTGTT GAAAATGCTG
CCGTTTGATA ACAAGTCGGA ATTTCAGATT GTGCTGGATA TGCCCGAAGG CAGTTCGCTA
GAAAAAACGC AGCGGGTCTT GTTTGAGATG GGCGCGGCAC TGAATGACGT TCCTGAAGTG
CGGGATTACC AAATCTATGC CGGAACGGCC GCACCGATTA ACTTCAACGG TTTAGTACGC
CATTATTTTA TGCGTAACCA AGCCCATCAA GGCGATATTC AAGTCAACTT ACTCGGGCGT
AAAGAGCGCG ACAGAGATAG CCACACCATC GCCAGCCAAC TCCGCCCACA ACTGAACGAA
ATAGCGCAGC GCTTTGGCGG CAAAGTGAAA GTGGTGGAAG TGCCGCCGGG GCCGCCGGTT
TGGTCGCCGA TTCTGGCGGA AGTGTATGGT CCAACTCAAG AAATTCGTAA CGAAGCAGCA
CGTCAGGTGC GTGAAATTTT CCGTGAAACG AAAGATATTG TTGACGTGGA CATGTACTTG
CCGGAAAGGC ATGAAAAATG GCAGGTGGTG ATTGATCGCA GCAAGGCCGC GCATCTGCAA
GTGCCTTATG CCTCAATTGT CGATGCTCTG GCGACCGCGG TGGGCGGCAA ACCCATCACT
TACTTGCACA GTGAACACAG CAAGTACCCG ATTCCGATCC AGATTCAAGC TACCGAAACC
GCAAAGGTGC GTTTAGAGCA GGTGCTGAAT ATGAAAGTCG GTAGCCCAAA CGGTCACGCT
TATCCGCTTT CCGATCTGGT TGAGGTTCGC CAAACCCGCA TGGATGATTA CATCGTCCAC
AAAAACTTGG TGCCTATGGT GATGGTGGTC GGCGATATGT CAGGCGAGCT GGATAGCCCA
CTGTACGGCA TGTTTGAGAT TGGTTTTGCG CTGGATGAGC AAATGGGATT GGCGCAGTAC
TACATCCATC AACCCGATGG CCTAAGCGGT GTTGCGGTGG CGTGGGATGG TGAATGGACG
GTGACTTACG AAACCTTCCG CGATATGGGC ATTGCCTACG CAGTAGGTAT GGTGCTGATT
TATCTGTTGG TGGTTGCGCA GTTTAAATCT TATCTGGTGC CGCTGATTAT CATGGCTCCA
ATCCCACTGA CCATCATTGG CGTGATGCCC GGCCATGCGT TGTTGGGCGC GCAATTTACC
GCCACGTCCA TGATTGGGAT GATTGCGCTG GCGGGGATCA TTGTGCGTAA CTCCATCTTG
TTGGTGGACT TTATTAACCA ACAGGTCGAG CAGGGCATGG CCTTCTCAGA AGCCGTGATT
CAGTCGGCGG CAGTGCGAGC CAAACCGATC ATGCTGACCG CCTTGGCGGC CATGATTGGC
GCAGTGTTTA TCCTCGATGA TCCTATCTTC AATGGTCTGG CGATCAGCTT GATCTTCGGG
ATTTTCGTCT CCACGGTACT GACCTTGTTG GTGATTCCGG TGCTCTATTA CGTGGTGATG
CGTAAACGCT TCGCGGCACA TTAA
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| Protein sequence | MMWSLHRPSQ QKVNDMESRL GISGRIAAAF QNSAMTPLLA LVGLLMGLFA VMVTPKEEEP
QIDVTFADVY IPFPGASPRE VESLVTTPAE QVISEIEGID KIYSFSQPDG AMIVAIFKVG
VPRNDAVVRI YNKLYSNKDW MPQGVGVGEP IIKPKGIEDV PIVTITLADK SDRFDQQQLT
QVAHGLETEL KRIPGTRDIY TIGGQNTIVD VRLDPAKMNG FGITLDQLNQ SLPAANQSSP
MLRLTHDNQE FPVQVGQFLT RVEEVKQLVV GLHNGKPVYL EDIASVSFGV NTPTQNVWTG
DRDGIHPAVT IAIAKKGGEN AVDVARAVEA RLVSLENQLI PQGIDVDITR DYGQTAADKS
NTLMGKLAFA TTAVVILVLL TMGWREALVV GMAIIVTLMI TLFASWAWGF TLNRVSLFAL
IFSIGILVDD AIVVVENIHR HMAMGKRKLS ELIPPAVDEV GGPTILATLT VIAALLPMAF
VSGLMGPYMS PIPINASMGM LISLAVAFVL SPWLAGKFLK AGHHQEEGKA ANGIFHKIMS
PFVTAPKQGR NRLFLLLTIL ALIAGSVLLP VFQAVVLKML PFDNKSEFQI VLDMPEGSSL
EKTQRVLFEM GAALNDVPEV RDYQIYAGTA APINFNGLVR HYFMRNQAHQ GDIQVNLLGR
KERDRDSHTI ASQLRPQLNE IAQRFGGKVK VVEVPPGPPV WSPILAEVYG PTQEIRNEAA
RQVREIFRET KDIVDVDMYL PERHEKWQVV IDRSKAAHLQ VPYASIVDAL ATAVGGKPIT
YLHSEHSKYP IPIQIQATET AKVRLEQVLN MKVGSPNGHA YPLSDLVEVR QTRMDDYIVH
KNLVPMVMVV GDMSGELDSP LYGMFEIGFA LDEQMGLAQY YIHQPDGLSG VAVAWDGEWT
VTYETFRDMG IAYAVGMVLI YLLVVAQFKS YLVPLIIMAP IPLTIIGVMP GHALLGAQFT
ATSMIGMIAL AGIIVRNSIL LVDFINQQVE QGMAFSEAVI QSAAVRAKPI MLTALAAMIG
AVFILDDPIF NGLAISLIFG IFVSTVLTLL VIPVLYYVVM RKRFAAH
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