Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0542 |
Symbol | |
ID | 5134481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 597110 |
End bp | 597814 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640530864 |
Product | putative repressor protein PhnR |
Protein accession | YP_001215381 |
Protein GI | 147671988 |
COG category | [K] Transcription |
COG ID | [COG2188] Transcriptional regulators |
TIGRFAM ID | [TIGR03337] transcriptional regulator protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 0.706261 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGCAATACG TAAAAATTAA AGATGCCATC GTAGAGCAGA TTGATGCCGG CATGCTGATG CCGCGCCAAA AGCTCCCCGC TGAGCGCAAG TTAGCCGAAT CATTTGATAC CACGCGAGTC ACCTTGCGTG AGGCGCTTTC CCTGCTCGAA GCTGAAGGAA AGATTTACCG TGAAGATCGC CGCGGTTGGT TTATTTCGCC CGCGCCTTTA CGCTATGACC CCACTCAAAC GCTCAACTTT ACTAATATGG CGTTGGCGCA AAATCGCCAG CCGAAAACGG AGTTGGTGTC TGCCAAAGCG GTGATCGCCA ACAAGCAGGC GACTCGTCTT TTAAAACTCA AACCGTTTTC GGATGTGTAT CGCGTAGACC GTGTGCGTTA TTTGGATAAC CGACCTGTGG TGTATGTCAC CAACTACATT CGCCCAGAGC TGTTTCCAAA CCTGCTCGAT TTTGATCTGT CGCAGTCACT CACCGATCTC TATCGTGAAC ACTATGCGAC ACAATACCAG ACGATTCACT ACCGTATATC CACCAGCTCG TTACTGGGTG AAATGGCTCA AGCCCTGCGC GCAACGTCAG GTACACCGGC AATGGTGGTG GAGCGGGTCA ACTATAACCA GAAAGGCGAG TTGATTGATT GTGATATTGA ATACTGGCGT CACGATGCCA TTACCATTGA ATCCATCGCA GAATTAAAGC GTTAA
|
Protein sequence | MQYVKIKDAI VEQIDAGMLM PRQKLPAERK LAESFDTTRV TLREALSLLE AEGKIYREDR RGWFISPAPL RYDPTQTLNF TNMALAQNRQ PKTELVSAKA VIANKQATRL LKLKPFSDVY RVDRVRYLDN RPVVYVTNYI RPELFPNLLD FDLSQSLTDL YREHYATQYQ TIHYRISTSS LLGEMAQALR ATSGTPAMVV ERVNYNQKGE LIDCDIEYWR HDAITIESIA ELKR
|
| |