Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0453 |
Symbol | |
ID | 5134789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 503136 |
End bp | 504275 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640530776 |
Product | putative exonuclease SbcD |
Protein accession | YP_001215294 |
Protein GI | 147671856 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTTC TACATACTTC GGATTGGCAT CTTGGTCGCC AATTTCATCA AGTCTCATTA TTAGATGATC AAAGCGCCGT TCTCGCACAA CTGATCGGCT TTCTGCGCGA CAATCCGGTG GATGCCGTGA TTGTCGCCGG TGATATTTAT GATCGGTCGA TTCCACCCAC GGCGGCGATT GATTTATTGG ATGAAGTGGT CAGCGTGATC TGTGGCGAGT TGAATACCCC TTTATTGATG ATCCCGGGCA ATCACGATGG TGCGAAGCGT TTAGGATTTG CCGCGAAGCA GATGAAAAAT TCGGGCTTAC ATATCTTTGC TGATTTTGCA CAGATGATGC AGCCACTTGT GCTGCATTCA CCACAAGCGG GCGAGGTCGC CTTCTGGGGA ATGCCTTATC ACGACCCTGA GGTAGTGCGC CATTACTATC AGAATGACAT CACCACGCAT GACGCTGCAC ACCAATTTTT GTGCGAGAGT ATTCTTGCTC AGTGCAATCC GTCACAACGT CACGTATTAA TCAGCCACTG TTTTGTCGAT GGCGCGATGG AGTCGGAATC TGAGCGGCCA TTATCGATTG GTGGATCAGA TCGTGTTGAC CATCGCCATT TTTTGCCTTT TGACTACGTC GCGCTTGGGC ATTTACACCA GCCGCAAATG AAAGGCGCGG AACACATTCG CTACTCTGGC TCATTGATGA AATACAGCTT CGGTGAGCAG CACCAAAACA AAGGCGCTAC CTTGGTAGAG CTGGGTCAGC AAGGTTTTAT CAGCGCAACG CATATTCCTC TCACCGCGCC TCATCAAATG CGCATTATCG AGGGAGAGTT GGAGGCGATT CTTGCGGCGG GAGCCACCGA CCCGCAGGCA GACGATTACC TGCTAGTGCG TCTTCTGGAT AAGCATGCCA TTCTCGACCC GATGGAAAAG CTGCGTCAGG TTTATCCCAA TGTGCTGCAT CTTGAAAAGC CGGGCATGTT GATTGGTGTG GATCAAGAGA TGGGCAAGGC ACGATTGGCG CGAGGGGAAT TGGATATGTT TCGTGATTTT TTCCTTGAGG CGAAACGTGA ACCTCTGAGT GAGCAGCAAG AGAAAGTGGT GATCGAGGTG ATTGCGCGCC TGAAAGCGGA GGGCATGTAA
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Protein sequence | MKFLHTSDWH LGRQFHQVSL LDDQSAVLAQ LIGFLRDNPV DAVIVAGDIY DRSIPPTAAI DLLDEVVSVI CGELNTPLLM IPGNHDGAKR LGFAAKQMKN SGLHIFADFA QMMQPLVLHS PQAGEVAFWG MPYHDPEVVR HYYQNDITTH DAAHQFLCES ILAQCNPSQR HVLISHCFVD GAMESESERP LSIGGSDRVD HRHFLPFDYV ALGHLHQPQM KGAEHIRYSG SLMKYSFGEQ HQNKGATLVE LGQQGFISAT HIPLTAPHQM RIIEGELEAI LAAGATDPQA DDYLLVRLLD KHAILDPMEK LRQVYPNVLH LEKPGMLIGV DQEMGKARLA RGELDMFRDF FLEAKREPLS EQQEKVVIEV IARLKAEGM
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