| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0377 |
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| Symbol | malS |
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| ID | 5134239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 413777 |
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| End bp | 415849 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640530700 |
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| Product | periplasmic alpha-amylase precursor |
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| Protein accession | YP_001215218 |
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| Protein GI | 147671412 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTGA ATGCCTTGAC CCTATCGCTG CTCTCAGCTC TAGCTTTGCC AGCGCTGGCC
TCGCCAGCTT CCACTGCGAA TTTAACGGTA GCAACCACCA CCAACAGCCG CGATTTTCCA
CTGCAAGCCG ATGAACCACT GGTGATCCCG CTCACTAAGG GCGACTACAC CTTGACCATT
AGCGGGATTG GCGGTGATTG CCCACCGGTC CCCGAACAAG AGATCAAATT CAACACGCCC
ATCGCTCTCA ATTGCCATGT CCCGACTCAG TTACCTTTGA GTATCCGTTT TACCGGGGAT
TACGCATTTC AGTGGCAAGC GCAAAACAAT ACTCTCACCT TCGTGCGTCA AACCACTAAG
GCAGCCAAAA CTGAGTTTCA TCGCCCGATC CCAAACGTCA GTTGCGAAGT GTATCAAGGC
GGTGAAGTGA CTTTAGATCT GGCGAGCAGC TTTGCCGATG GAACCGAGTT GCAAGATGCT
ATGACTGGGC AAGTAGTGAC CATCGAGCAA GGCAAAGTGC GCTTAACCCC TTCCGCTAAC
AGCGGCGGCT TGGTGTTGTT GGAACCTAAA CAGACAGCAA AAGCCGAGCC CAAACAGCCC
TTTACCTATC GAAATGCCAA TATTTATTTT GTGATGGTTG ATCGCTTCTA CAACGCAGAC
CCAAGCAATG ATGGCAGTTA TGGTCGTCAC AAAGATGGCC AAGAGGAGAT CGGAACATTT
CATGGCGGCG ATCTCAAGGG TGTGATTGCA AAACTTGACC ATATCCAAAG CTTAGGCACA
GATGCTATCT GGCTCTCTCC GATTGTCGAA CAGGTACATG GGTTTGTCGG CGGTGGCGAG
AAAGGATCAT TCCCGTTTTA TGCCTATCAC GGCTATTGGA CCCGCGATTT CACCAAGATC
GATGCCAACT TTGGGAAAGA TGAGGATTTA CAAACCTTAG TGCGTGAGGC GCATCGTCGC
GGCATTAAAA TTTTGATGGA TGCGGTGATC AATCATGCAG GTTACGCGAC ACTCGCCGAT
TTACAGCAAG ATGCAGTACA AGTGGTGAAC GCACCTATGC TGCCTGAACG TTGGAATGAC
TGGAAACCCA GCGCCGACGA AAACTGGCAC AGCTTCCATC AAGCCATTGA TTACCAAAGC
AAGAATTGGC AACAGTGGTG GGGGCCAGAC TGGGTACGCG CAGGCTTACC GGGCTATCCT
GCGCCGGGCA GCAGTGACAT CACGATGAAT CTCGCCGGTT TACCGGATTT TCGCACTGAA
TCCCCCCAAG CCGTTACCCC GCCGCAGTGG CTACTCAACA ATCCCGGCAC ACGAGTGGTG
AGCAAACCCA ATTACACTGT CGCTGACTAT TTAATTGAAT GGCAAAGCGA TTGGGTACGC
CGCTTTGGGA TCGACGGTTT TCGCATCGAC ACCGTCAAAC ATGTGGAAGG GGAAGTGTGG
CAACGCTTAA AACAGCGCGC GACGGAAAGC CTTGCAGCGT GGCGTAAAGA CAATAATCAA
AGCGGTGAGC CGTTTTGGAT GATGGGCGAA GTGTGGGGGC ACGGTGCCTA TCGCAGCCCC
TACTTTGATG ATGGCTTTGA TGCATTGATT AACTTTGACA TTCAAAAACG TATGGATAAC
GGCGCAGCCT GTTTGAGCCA GATGGCGATG GTGTATCGCG ATTACGCGCA AACCCTCGCC
AAATATCCCG ACTTTAACCC CGTCAGTTAT ATGTCCTCGC ACGATACTGA GTTGTTTTTC
GGGCGCTTTA AATCACTGGA TATGCAACGT AACGCCGCCA ATGCCCTGCT ACTGACACCG
GGTGCTATCC AAGTGTATTA CGGCGATGAA GTCGCCCGCG AAGCGGGACC GTACGCAGAC
GATTTCCATC AAGGCACTCG CTCTGATATG CCTTGGGAAT GGAATGCCGA ACGCCAAGCA
CTGCTCAAGC ATTGGCAAAC CTTAGGTCAA TTCCGTCAAC GTCACCCTGC GATAGGAACG
GGAGAGCATC GCGAAATCGC CCAATCTAAC GCTTATGTTT TCACTCGCAC ATTGGGTGAA
GATAAGGTGG TCGTGGCGTT CGTTGGCCGC TAA
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| Protein sequence | MKLNALTLSL LSALALPALA SPASTANLTV ATTTNSRDFP LQADEPLVIP LTKGDYTLTI
SGIGGDCPPV PEQEIKFNTP IALNCHVPTQ LPLSIRFTGD YAFQWQAQNN TLTFVRQTTK
AAKTEFHRPI PNVSCEVYQG GEVTLDLASS FADGTELQDA MTGQVVTIEQ GKVRLTPSAN
SGGLVLLEPK QTAKAEPKQP FTYRNANIYF VMVDRFYNAD PSNDGSYGRH KDGQEEIGTF
HGGDLKGVIA KLDHIQSLGT DAIWLSPIVE QVHGFVGGGE KGSFPFYAYH GYWTRDFTKI
DANFGKDEDL QTLVREAHRR GIKILMDAVI NHAGYATLAD LQQDAVQVVN APMLPERWND
WKPSADENWH SFHQAIDYQS KNWQQWWGPD WVRAGLPGYP APGSSDITMN LAGLPDFRTE
SPQAVTPPQW LLNNPGTRVV SKPNYTVADY LIEWQSDWVR RFGIDGFRID TVKHVEGEVW
QRLKQRATES LAAWRKDNNQ SGEPFWMMGE VWGHGAYRSP YFDDGFDALI NFDIQKRMDN
GAACLSQMAM VYRDYAQTLA KYPDFNPVSY MSSHDTELFF GRFKSLDMQR NAANALLLTP
GAIQVYYGDE VAREAGPYAD DFHQGTRSDM PWEWNAERQA LLKHWQTLGQ FRQRHPAIGT
GEHREIAQSN AYVFTRTLGE DKVVVAFVGR
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