Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0160 |
Symbol | |
ID | 5134980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 187754 |
End bp | 189664 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640530483 |
Product | hypothetical protein |
Protein accession | YP_001215001 |
Protein GI | 147671848 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCTAT ACAAACAACT AGTCGCAGGG ATGATTGCGG TGTTTATTCT GTTGTTGATT TCGGTTTTTA CTATCGAATT CAACACCACT CGCAACAGTC TTGAACAACA ACAACGCTCT GAAGTCAACA ACACCATAAA TACGGTGGGT TTGGCTTTAG CGCCTTATCT GGAGAAGAAA GACACCATTG CGGTAGAGTC AGTCATCAAT GCGCTGTTTG ATGGCAGTAG TTACTCGATC GTACGTCTGA TTTTTCTCGA TGACGGTACG GAAATCCTGC GCTCATACCC TATCCAACCC AATAATGTGC CGGCTTGGTT TACTCAGTTA AATCTGTTTG AGCCCATCCA TGATCGGCGT GTTGTAACCA GTGGTTGGAT GCAATTGGCG GAAGTGGAAA TCGTCAGCCA TCCTGGTGCG GCTTACGCTC AACTCTGGAA AGCATTAATT CGTTTAAGTA TCGCGTTTTT GGCGATCTTA GTGATTGGTA TGTTTGCCGT CGCCTTCATT TTGAAGCGCT CTCTAAGACC ACTACAACTC ATCGTCAACA AAATGGAGCA GGTTGCTAAC AACCAATTTG GTGAGCCTCT ACCGCGCCCC AACACTCGAG ATCTGATTTA TGTAGTAGAT GGCATCAATA AGATGTCTGA ACAGGTCGAG AAAGCGTTTA AAGCCCAAGC CAAAGAGGCG CAGCAACTGC GTGAACGTGC TTATCTTGAC CCAGTTTCTC ATCTTGGCAA CCGAGCATAC TACATGAGCC AATTGAGTGG CTGGCTCTCT GAAAGCGGCA TCGGTGGTGT AGCCATTCTA CAAGCTGAAT TCATCAAAGA GCTTTATGAA GAGAAGGGCT ATGAAGCCGG TGATGGCATG GTGCGCGAAC TGGCGGATCG CCTTAAAAAC TCCATCACCA TCAAGGACAT CTCTATCGCT CGTATCTCCA CTTACGAGTT CGGTATCATC ATGCCTAACA TGGATGAAAC TGAGCTCAAA ATCGTGGCAG AGAGCATCAT CACTTGTGTG GACGACATTA ACCCTGATCC TACTGGTATG GCGAAAGCCA ATTTATCGCT TGGCGTGGTA AGCAATAAGC GTCAATCCAG CACCACAACG CTCTTGTCCC TGCTGGATAA TGCGTTAGCT AAAGCGAAAT CCAATCCTGA GCTGAACTAC GGCTTTATTA GCAGTGATAC TGATAAAATC ATCTTGGGCA AACAGCAGTG GAAAACTCTG GTCGAAGAGG CAATCCATAA CGACTGGTTT ACTTTCCGCT ACCAAGCCGC CAACAGCAGT TGGGGAAAAA CATTCCATCG CGAGGTCTTT TCTGCGTTTG AGAAAGACGG CGTGCGTTAC ACGGCAAACC AATTCTTGTT TGCCCTTGAA CAGCTCAATG CTAGCCATAT CTTCGATCAG TACGTGATTG AACGTGTGAT TCAACAGCTT GAAAAAGGCG AACTGACCGA TCCACTCGCG ATCAACATCG CACAAGGCAG TATCTCTCAA CCGAGCTTTA TCCGTTGGAT CAGCCAAACC TTAAGCAAGC ATCTTTCTGT GGCCAACTTA CTGCATTTTG AGATCCCAGA AGGCTGTTTC GTCAATGAAC CGCATTACAC TGCGCTATTT TGTAACGCAG TACGCAATGC AGGGGCGGAC TTTGGGGTAG ACAACTACGG ACGTAACTTC CAATCTCTCG ACTACATCAA CGAGTTCCGT CCTAAATACG TCAAACTGGA TTATCTATTT ACTCACCATT TGGATGATGA ACGCCAGAAA TTTACCCTGA CCTCAATCTC GCGCACCGCG CATAACTTAG GGATCACCAC CATCGCATCA CGGGTTGAAA CACAGACTCA GCTCGATTTT CTTTCAGAAC ATTTCATCGA AGTCTTCCAA GGCTTCATTG TTGATAAGTA A
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Protein sequence | MTLYKQLVAG MIAVFILLLI SVFTIEFNTT RNSLEQQQRS EVNNTINTVG LALAPYLEKK DTIAVESVIN ALFDGSSYSI VRLIFLDDGT EILRSYPIQP NNVPAWFTQL NLFEPIHDRR VVTSGWMQLA EVEIVSHPGA AYAQLWKALI RLSIAFLAIL VIGMFAVAFI LKRSLRPLQL IVNKMEQVAN NQFGEPLPRP NTRDLIYVVD GINKMSEQVE KAFKAQAKEA QQLRERAYLD PVSHLGNRAY YMSQLSGWLS ESGIGGVAIL QAEFIKELYE EKGYEAGDGM VRELADRLKN SITIKDISIA RISTYEFGII MPNMDETELK IVAESIITCV DDINPDPTGM AKANLSLGVV SNKRQSSTTT LLSLLDNALA KAKSNPELNY GFISSDTDKI ILGKQQWKTL VEEAIHNDWF TFRYQAANSS WGKTFHREVF SAFEKDGVRY TANQFLFALE QLNASHIFDQ YVIERVIQQL EKGELTDPLA INIAQGSISQ PSFIRWISQT LSKHLSVANL LHFEIPEGCF VNEPHYTALF CNAVRNAGAD FGVDNYGRNF QSLDYINEFR PKYVKLDYLF THHLDDERQK FTLTSISRTA HNLGITTIAS RVETQTQLDF LSEHFIEVFQ GFIVDK
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