Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0145 |
Symbol | |
ID | 5134084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 170110 |
End bp | 171675 |
Gene Length | 1566 bp |
Protein Length | 521 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640530468 |
Product | ABC transporter, periplasmic substrate-binding protein |
Protein accession | YP_001214986 |
Protein GI | 147671855 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 53 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTTATGTT ATAACATTTT AATTAAGGAC ATTTTGATGA AAAAAAGGTT GTTCGGTTTG ATTTTAGCGC TAGGAGGTGC AGGGATTTGG TTGACGAAAA CGGAGCCTGC ACCGAGTTCG CTGGAGATTT CAGGCCCCTT TGAGTTTAAC AGCCAAGATT TAGCCAAGGA CGGATTCCTG TTTTCGCGTC TACAAGTGGT TGAATCCTTG GTTGGCATCA ATGAGAACTC ACAACCATAC CCTTTGCTGG CAAAAAGCTG GACGGTAAGT GATGATGGAT TAGTGTGGCG TTTCCAAATA CGTCCTGAAG TACAATTTCA CGATGGCAGC CAATTGACGG CACAAGCGGC GGCGACGGCT CTTAATCATG CGCTAGGTAA GCCGGGAGTA ATAAAACAAG TACCGATCAA GGCGATTACC GCGCAAAACG ATCAAGTGGT GATTGAACTT AACACTGTCT ATCGCCCGCT CGCAGCGGTG CTTGCTCACT ACTCGCTCGC GATTGCCTCC CCCAGCTCTT ATGATGCCAG TGGTAACGTG ATTCGGCTCT TAGGCACGGG GCCTTATCAA ATCGCACAGT TGCAAGCGCC TCATAAAGCC AGTGTTATCC GCTTTAACGC TTATTGGGGT AAACCCGCCA GTATCGAAAC CATCAATTAT CTGGCAGGCC ATCGCTCAGA AAGCCGCGCT TTGTTAGCAC AAACTGGGCA AGCCGATCTG GTCTACACCC TTGACCCTAT TAGCATTCCG AGTTTACAAC AGAGCCACAA TCTGGATCTC TACATTGAGT CGATGCCGCG TACAGTTCTG ATCAAACTCA ATAACGAACA CCCTTTGCTT AATCACGCCG ATGTTCGTCA AGCAATCAGT TTGGCAATCA ATCGTGAAGG TATTGCTCAA TCGGTACTTA AGTTACCGGG ATCAGAAGCG CATCAACTCT TTTCTCCCGC ACTCGGAGCT TGGCACTTAG CAGACAAAAC ACAGCCGCAG CGTCATTTAG CGACCGCGCA AACCCTGCTA GCCAATCAAG GCTGGACGCT CAATGACCAA GGTTTACTGG AGCGAGAAGG CCAAGCGTTC CGAGTTCAAT TGCTGACTTA TGCTGATCGC CCTGAACTAC CTTTGATCGC CACCGCGCTA CAAGCCCAGC TCAAAGAGAT TGGTATTCAA GTGGATATTG CGATCGATAA CTCAAGTGCC ATCCCCGCCA AACATCATGA TGGCACCCTA GAAATGGCCT TGATTGCCCG CAACTTCGGT ACTATTGCCG ATCCTCTGCC ACTGCTTTTG AGTGATTTTG CAACGCATCA AGGATCGGAT TGGGGCCCAA CCAATTGGTC ATCACCTCAG TTTAGCCAAC TGCTGGCTGA GCTTTCGACC GAATCAGACA ATGCGCGTTA TCAGCAATTG GCCGCCCAAG CCTCTCAATT ACTGGCCGAT GAGATGCCGC TCATCCCTGT GACTTATTAC CGCCAGATTG TGTCGGTCAA TAAACGAGTC GCTGGATTTT CGTTTGATCC CTTTGAAATT AACTACCGCG TCGCGCAGAT GAGTTTCAAT GACTAA
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Protein sequence | MLCYNILIKD ILMKKRLFGL ILALGGAGIW LTKTEPAPSS LEISGPFEFN SQDLAKDGFL FSRLQVVESL VGINENSQPY PLLAKSWTVS DDGLVWRFQI RPEVQFHDGS QLTAQAAATA LNHALGKPGV IKQVPIKAIT AQNDQVVIEL NTVYRPLAAV LAHYSLAIAS PSSYDASGNV IRLLGTGPYQ IAQLQAPHKA SVIRFNAYWG KPASIETINY LAGHRSESRA LLAQTGQADL VYTLDPISIP SLQQSHNLDL YIESMPRTVL IKLNNEHPLL NHADVRQAIS LAINREGIAQ SVLKLPGSEA HQLFSPALGA WHLADKTQPQ RHLATAQTLL ANQGWTLNDQ GLLEREGQAF RVQLLTYADR PELPLIATAL QAQLKEIGIQ VDIAIDNSSA IPAKHHDGTL EMALIARNFG TIADPLPLLL SDFATHQGSD WGPTNWSSPQ FSQLLAELST ESDNARYQQL AAQASQLLAD EMPLIPVTYY RQIVSVNKRV AGFSFDPFEI NYRVAQMSFN D
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