| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1560 |
|---|
| Symbol | |
|---|
| ID | 5170253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1557913 |
|---|
| End bp | 1559571 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640564086 |
|---|
| Product | Alpha-galactosidase-like protein |
|---|
| Protein accession | YP_001245143 |
|---|
| Protein GI | 148270683 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3345] Alpha-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.59787 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAAATAT TCGGAAAGAC CTTCAGAGAG GGAAGATTCG TTCTCAAAGA GAAAAACTTC
ACAGTTGAGT TCGCGGTGGA GAAGATACAC CTTGGCTGGA AGATCTCCGG CAGGGTGAAG
GGAAGTCCGG GAAGGCTTGA GGTTCTTCGA ACGAAAGCAC CGGAAAAGGT ACTTGTGAAC
AACTGGCAAT CCTGGGGACC GTGCAGGGTG GTCGATGCCT TTTCTTTCAA ACCACCCAAA
ATAGACCCGA ACTGGAGATA CACCGCTTCG GTGGTGCCCG ACGTACTTGA AAGGAACCTC
CAGAGCGACT ATTTCGTGGC TGAAGAAGGA AAAGTGTACG GCTTTCTGAG TTCGAAAATC
GCTCATCCTT TCTTCGCTGT GGAAGATGGG GAACTTGTGG CATACCTCGA ATATTTCGAT
GTCGAGTTCG AAGACTTTGT TCCTCTTGAA CCTCTCGTTG TACTCGAGGA TCCCAACACA
TCTCTTCTTC TGGAGAAATA CGCGGAACTC GTTGGAATGG AAAACAACGC GAGAGTTCCA
AAACACACAC CCACTGGATG GTGCAGCTGG TACCATTACT TCCTCGATCT CACCTGGGAA
GAGACCCTCA AGAACCTGAA GCTCGCGAAG AATTTCCCGT TCGAGGTCTT CCAGATAGAC
GACGCCTACG AAAAGGACAT AGGTGACTGG CTCGTGACAA GAGGAGACTT TCCATCGGTG
GAAGAGATGG CAAAAGTTAT AGCGGAAAAC GGTTTCATCC CGGGTATATG GACCGCTCCG
TTCAGCGTCT CTGAAACCTC CGATGTATTC AACGAACATC CGGACTGGGT GGTGAAGGAA
AACGGAGAGC CGAAGATGGC TTACAGAAAC TGGAACAAAA AGATATACGC CCTCGATCTT
TCAAACGATG AGGTTCTGAG CTGGCTCTTC GATCTCTTCT CATTTCTGAA AAAGATGGGC
TACAGGTACT TCAAGATCGA CTTTCTCTTC GCGGGTGCCG TTCCAGGAGA GGGAAAAAAG
AACATAACAC CGATTCAAGC ATTCAGAAAA GGAATGGAGA CGATCAGAAA GGCTGTGGGA
GAAGATTCTT TCATCCTCGG ATGCGGTTCT CCCCTTCTTC CCGCAGTGGG ATACGTCGAC
GGCATGAGGA TAGGACCCGA CACCACACCG TTCTGGGGAG AACATATAGA AGACAACGGA
GCTCCCGCTG CAAGATGGGC GCTGAGAAAC GCCATAACGA GGTACTTCAT GCACGACAGA
CTCTGGCTGA ACGACCCTGA CTGTTTGATA TTGAGAGAGG AGAAAACGGA TCTCACACAG
AAGGAAAAGG AGCTCTACTC GTACACGTGT GGAGTGCTCG ACAACATGAT CATAGAAAGC
GATGATCTCT CGCTCGTCAG AGATCATGGA AAAAAGGTTC TGAAAGAAAC GCTCGAACTC
CTCGGTGGAA GACCACGGGT TCAGAACATC ATGTCGGAGG ATCTGAGATA CGAGATCGTC
TCGTCTGGCA CTCTCTCAGG AAACGTCAAG ATCGTGGTCG ATCTGAACAG CAGAGAGTAC
CACCTGGAAA AAGAAGGAAA GTCCTCCCTG AAAAAAAGAG TCGTCAAAAG AGAAGACGGA
AGAAACTTCT ACTTCTACGA AGAGGGTGAG AGAGAATGA
|
|---|
| Protein sequence | MEIFGKTFRE GRFVLKEKNF TVEFAVEKIH LGWKISGRVK GSPGRLEVLR TKAPEKVLVN
NWQSWGPCRV VDAFSFKPPK IDPNWRYTAS VVPDVLERNL QSDYFVAEEG KVYGFLSSKI
AHPFFAVEDG ELVAYLEYFD VEFEDFVPLE PLVVLEDPNT SLLLEKYAEL VGMENNARVP
KHTPTGWCSW YHYFLDLTWE ETLKNLKLAK NFPFEVFQID DAYEKDIGDW LVTRGDFPSV
EEMAKVIAEN GFIPGIWTAP FSVSETSDVF NEHPDWVVKE NGEPKMAYRN WNKKIYALDL
SNDEVLSWLF DLFSFLKKMG YRYFKIDFLF AGAVPGEGKK NITPIQAFRK GMETIRKAVG
EDSFILGCGS PLLPAVGYVD GMRIGPDTTP FWGEHIEDNG APAARWALRN AITRYFMHDR
LWLNDPDCLI LREEKTDLTQ KEKELYSYTC GVLDNMIIES DDLSLVRDHG KKVLKETLEL
LGGRPRVQNI MSEDLRYEIV SSGTLSGNVK IVVDLNSREY HLEKEGKSSL KKRVVKREDG
RNFYFYEEGE RE
|
|---|
| |