Gene Tpet_1082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1082 
Symbol 
ID5170637 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand- 
Start bp1110514 
End bp1111497 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content36% 
IMG OID640563599 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001244672 
Protein GI148270212 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAAGAA ACTATTATGT TTTTTCCTCT GGAAGAATAC GAAGGCGAGA AAATAGTATC 
TTAATAGAAT ATCAGGATAG AGATGGGAAA CAGCAAAAAA GGTTCATTCC GGTAGAAAAC 
GTTGATCAGA TATTTTTCTT AGGTGAGGTT GATTTGAATT CAAAATTTCT GGATTTTGCT 
GCAAAAAACA ATATTGTTCT CCATTTTTTC AATTATTATG GATATTACAC CGGCTCTTTT 
TATCCAAGGG AAAAATTTCT CTCAGGAGAA CTTTTGGTAA GACAGGTGGA ACACTATCTG 
GATAATGAGA AAAGGTTGAG TTTGGCGAGA AAGTTTGTAG AAGGAGCAAT CCATAACTTC 
AAACGAAACA TCGAAAAAAG AGGATTCGAT ATTGTCAGTA AGATATCCGA ATATCAGGAA 
AGAATAAAGC ACGTAGCGAC TATCCCGGAG CTCATGAGTT GTGAAGCGCA CGCCAGAAAG 
CTCTATTACT CTACCTGGGA AGATATAACA GACTGGCCGT TTGAAGAAAG AAGCATGCAA 
CCGCCTTTGA ATGAACTGAA TGCTCTTATT TCCTTTGGAA ACTCTCTTAC CTATTCCGTT 
GTTCTGAAGG AACTTTATCA TACACATTTG AATCCTACCG TTAGTTATCT TCATGAACCG 
GGTACCAAAA GGTTTTCGCT TGCTTTGGAC ATATCGGAGA TATTTAAACC TATTTTTGTT 
GATAGGATAA TATTCAAACT CATAAATCTT GGCAAGATTA AACGTGAAAA TCATTTCCTT 
CAGGAATCCA ATGGAGTGTT TTTAAACGAT GAAGGACGAA GAATATTTGT GGAGGAATTC 
GAAAATATGC TTCAACAAAC AGTTCTTCAT AGAAAGCTGA AGAGAAAGGT TAAATATCAG 
TCTTTCATAA GATTGGAGGC TTATAAAATA ATCAAACATC TGCTCGGAGA AGATGAGTAC 
AAGCCTTTCA AGGTTTGGTG GTAG
 
Protein sequence
MGRNYYVFSS GRIRRRENSI LIEYQDRDGK QQKRFIPVEN VDQIFFLGEV DLNSKFLDFA 
AKNNIVLHFF NYYGYYTGSF YPREKFLSGE LLVRQVEHYL DNEKRLSLAR KFVEGAIHNF 
KRNIEKRGFD IVSKISEYQE RIKHVATIPE LMSCEAHARK LYYSTWEDIT DWPFEERSMQ 
PPLNELNALI SFGNSLTYSV VLKELYHTHL NPTVSYLHEP GTKRFSLALD ISEIFKPIFV 
DRIIFKLINL GKIKRENHFL QESNGVFLND EGRRIFVEEF ENMLQQTVLH RKLKRKVKYQ 
SFIRLEAYKI IKHLLGEDEY KPFKVWW