| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0960 |
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| Symbol | |
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| ID | 5170483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 990891 |
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| End bp | 992915 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640563478 |
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| Product | glycoside hydrolase family 13 protein |
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| Protein accession | YP_001244554 |
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| Protein GI | 148270094 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000677412 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAC TTCTCATTCT CTCTGTGCTT TTGCTGAGTG TCTTCGTATT TTCTGATGTC
TTTGTAGAAA ACGGAAAAGT GATTTTCACC TTCGAGTGGG AAGGAGCCAA GGTGGTGTAT
CTCGCAGGAA CTTTCAACAA TTGGAATCCC ACTGCGCTTC CAATGAAAGA AGTGGAACCC
GGTCTCTGGA GAGCAGAGCT CGAACTCGAA CCCGGAACGT ATCAATACAA ATACGTGATA
GATGGAACTA CGTGGAAAGA AGATCCCAAC GCACCCGGAT ACGTGGACGA TGGTTTCGGA
GGCTACAACG GAATATTCAC ACTGGTGGAA AAAGACGGAG AGCTTTTCAT CGTTGGTCCT
CAGAAGAAAG AAGAATCAAA GAAATACGAG CCCAATCCCG ACAGGGAAGA CACCATCTTT
GTCGAAGACG GTATAGTGGT TCTCAGATAC TACAATCCCG AAGCGGAATT CGTAACCATA
GCTGGAAATT TCAACAACTG GAACGCAGAA GAGATAGAGA TGTATCCACT CGAAGATGGT
TGGTGGGAAG GAGTACTTGA ACTTGGTCCT GGAGTGTATG AATACAAGTT CGTTGTGAAC
GGTGAGGAAT GGGTGACTGA CCCCAACGCC TTTGCCTTTG TCGATGACGG CTTTGGAGGA
AAGAACGGCG TTTTCGAAGT TTACGAAGAA AACGGAGAAC TGAAGGTAAA ATCTCCCATC
GAGGAAACTG TCCAAGAAGA GACTTCAGAA GAAGCACCCG AAGTCGCTCA TCAAGAAACC
GCAGAAGCCG GACCAGAAGA GGTTGAAAAA TCCGAGCTGA AAGAAGGACT CAGCGTGGAA
GACAGTTTTG TCGTCTTCGT TGTTAGAAAG CCAGAAGCTT CCGAGGCTTA CGTTGCGGGA
AGCTTCAACA ACTGGAGCAC TACAGCGAAT CCAATGGAAA GAGAAGGGAA CCTCTGGGTG
GCAAGAATCA AGCTCAACCC TGGCACTTAT CAGTACAAGT ACGTCTTCAC GATAGCGGGA
AATCAGGTCT GGCAAGAAGA TCCCAACGCG CCTTCCTATG TCCCGGATGG ATTCGGTGGA
AAAAACGGCG CTTTCATGCT CTCTGAAGAG GATGGAAAAC TCGTCATAAA ACCACTGGAA
CAGAAATCTG AGAGTGAGAC TCCGTTCTTC GGGAAATACT TCATTGATCT GACTTACAAA
TACGCAACGG ATACCTTCCT CAAATCTCTC GAAAGCTCCC ATGAACTCAC TCTCGGTGTA
AAAACCGACT TCTTGAAAGC AACCTTGAAT TTCAAACCGG AAGGCTCTTT CTTGGACAGC
GCGAACATAA AGGTGGAAAA GGACGGTTTC GAGGTTTTCG GACACTACAA AGTGGCATCT
CTGGTGGAAG GGAAGCCCTA CGAAGAATGG TTCGCCGAAA CAGGCTTTGG TCTCGGTATT
TCTTTCCTTT CCTACAAGTT CACAGCTGAT GTCGCTTTTG ACACAAACGC GGAAAAGGAA
AGATTTTTGA TAGGAGTTTC GGGAGAGAAT TTCGGTACCT ACTTTGGAAG TAATTACTTG
CTTGGGATAG AAAAAATAGA CCTCGCAGGT TTCTTATCCT TTGATCTTCT TGGAGCAAAA
ACAACCGTCT GGACCGGTTT AATCTTTGCC AAGCCCGTTC TCTACTTTGT GAACCTCGAA
GTCGATTCGG ACAACTTCGA TGTCAACTAC CTGTACTATG AAAAAACATC TTCAGAAGAC
AAAGGATTTC TCAAAGCAAG CATTGATCTC TTCAACCTGG AACTCTACGG GGATTACAAT
TTCAACAACA AAACGTATAC GGTAAGCGCA GGGTACGTTT TCGATGACAC CTATGTCCTC
GGATTGGCCT ACAGATACGG AGACTACGAC AACTTTGAAA ACGACCCCGA CAAAATAACC
GTCTTTGGGG AGCTCAGAAA CGAATTCGCA AGCGCAAAAC TTGGAGTAAC TTACGACGCA
TACAAGAACA TCTATCTGGA TTTCCAAGGT GAAGTCAACT TCTGA
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| Protein sequence | MKKLLILSVL LLSVFVFSDV FVENGKVIFT FEWEGAKVVY LAGTFNNWNP TALPMKEVEP
GLWRAELELE PGTYQYKYVI DGTTWKEDPN APGYVDDGFG GYNGIFTLVE KDGELFIVGP
QKKEESKKYE PNPDREDTIF VEDGIVVLRY YNPEAEFVTI AGNFNNWNAE EIEMYPLEDG
WWEGVLELGP GVYEYKFVVN GEEWVTDPNA FAFVDDGFGG KNGVFEVYEE NGELKVKSPI
EETVQEETSE EAPEVAHQET AEAGPEEVEK SELKEGLSVE DSFVVFVVRK PEASEAYVAG
SFNNWSTTAN PMEREGNLWV ARIKLNPGTY QYKYVFTIAG NQVWQEDPNA PSYVPDGFGG
KNGAFMLSEE DGKLVIKPLE QKSESETPFF GKYFIDLTYK YATDTFLKSL ESSHELTLGV
KTDFLKATLN FKPEGSFLDS ANIKVEKDGF EVFGHYKVAS LVEGKPYEEW FAETGFGLGI
SFLSYKFTAD VAFDTNAEKE RFLIGVSGEN FGTYFGSNYL LGIEKIDLAG FLSFDLLGAK
TTVWTGLIFA KPVLYFVNLE VDSDNFDVNY LYYEKTSSED KGFLKASIDL FNLELYGDYN
FNNKTYTVSA GYVFDDTYVL GLAYRYGDYD NFENDPDKIT VFGELRNEFA SAKLGVTYDA
YKNIYLDFQG EVNF
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