| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0462 |
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| Symbol | rpoB |
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| ID | 5170470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 453324 |
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| End bp | 457115 |
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| Gene Length | 3792 bp |
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| Protein Length | 1263 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640562966 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001244062 |
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| Protein GI | 148269602 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAGA TCTCTTGCGG TAGGAGGACA AGGGTTTCTT TCGGCAAGAC TCAGGAACCC
CTACCAATTC CAGACCTTGT GGAGATTCAG AAGATTTCCT ACCGAAGATT CCTCGAAGAA
GGTTTGCTCG AAGTCCTCAA AAAATTTTCC CCCATTTATT CGCAGGCGAC TCGCTCAGAT
TTGAAAAAAT CGGACAGAGG ATTTGCCCTT GAATTTGTTT CAACCAGGAT AGGAGAACCT
GTTGTTGATC CCCTTGAATG TAAAGCAAAG GGTTTAACTT ACAGTGTTCC AATATACGCA
ACGGCTCGCC TTACCGACAT GAAAAGCGGT GAAATGAAGG AAGAAGAAGT GTTCCTTGGC
TACATTCCCT ACATGACAGA TCGTGGAACG TTCATAATAA ATGGAGCAGA AAGAGTTGTG
GTCAATCAGA TAGTAGTTTC TCCAGGGCTT TACTTCTCGT CTGAGTACAT CGACAGAGAA
GAGTACGGCG GATACTTTCT TCCATCTCGA GGCGCATGGC TTGAAGTTAT CCTCGATCCC
TACGATGGAG TTCTTTACGC GGGTCTTGAC GGAAAGAAGG TCAATCTTTT CCTCTTTCTG
AAAACGATCG GTTATGAAAA GGATGAGGAT ATCCTCTCTC TTTATCCCAC CTATCTGGAT
GCCGACGATG AAGACAGTCT CCTGCTCCAT GTGGGTTCCA TTCTGCTTGA AGACATCTAC
GATGGTGACA GGAAGATCGC CGAAAAATGG GATATCCTGA CCAAAGATCT CGCGGAAAGG
ATTTTGATGA TAGATGACAT AAATCAGATA AAAATAGTTC ATCCAATAGC TCAAAATACA
TTTGAAAAGA TGCTGGAATT GGTGTCTTCC TCGGGCGAAG AGGGAGAGGA AGAAGAGGAA
AAGACAAAGA TTTACGGTTT AAACGAAGTT ACCGTTGTGG ACGCTTATCT GGAGATATTT
AGAAGATTGC GACCCGAGGA ACTTCCAAGA ATAAACGCGG CGAAGAGGTA TCTTCACGAT
CTCTTCTTTA ATCCAGAAAG ATACGATCTT TCCGAGGTGG GAAGGTACAA AGTCAACGAA
AGACTAAGAA ACGCTTACAT CAGGTACCTC ATAGAGGTTG AGGGAGAAGA TCCCGAAGAA
GCGAGGAAGA AGGTTTACAA CGAAAATTCT CTCGTTCTGA AACCACTCGA TATAGTCCTC
GCTTCCAGAA TTCTCTTCGA CTACTTTGAG AGAAGATACG TCAACGATTT TGAAATAGAT
TCCTACGAGT TGAGAAATTT GATCAGAATC TTCAAGGAAG AATATTTGGA AAAGAGAAAA
ACAGCTTCTT ACGACCTCAG AAAGCTTGTA TCGGTGTTTC GGAGGAACTA TGGAGTAACA
TCCGATCTCA GTGTCCTTGC TGCTATCAGG TACATCTCCA ACATAAACAA GGAGCTTCCT
TCGATACCTT TCGATACAAA AGACCATCTC GGGAACAAGC GCGTTAGAAC GGTGGGAGAA
CTCGTCCAGA GAGAGTTCGA GAGGTTGTTC GCAAGGGCAC AGAAGGCCAT TCAGGAAAGA
CTCACACTCA TAAACTCTCT GAGCAAGGTT TCCATTCAGA GTCTTATAAA CATAAAATCT
ATCATATCAA CGGTCAACCA GTTTTTCGCG ATGAACCAGC TTTCTCAGTT CATGGATCAG
GTGAACCCTC TGTCGGAACT CACTCACAAA AGAAGGGTTT CCGCTGTTGG ACCTGGTGGG
TTGAGAAGAG AATCCAAAGT CTTCGAAGCA AGAAACGTGC ACTACTCACA GTACGGAAGG
CTGTGTCCCA TTGAGACACC TGAAGGTGCG AACATAGGAT TCATAACATC GCTGGCTATA
TACACCAAAA TTGATGAATA CGGATTTCTC ATGACTCCTT ACAGAAAGGT AGTCAATGGA
AAAGTGACGG ATGAAGTAGT CTACTTGAGG GCCAACGAAG AAGAAGATTT CAAAATTGTA
CCTGCCACCA CACCCGTGGA TGAAGAGGGC AACATAATAC CAGAGAGAGT AGTGGCTCGA
GTGGGTGAGG ATATCAGGCT TGTTCCCAGA GAAGAAGTAG ATTTCATGGA TGTATCAACA
AAACAGCCCT TCAGTGTCTC GGCTTCACTC ATTCCATTCC TCGAACACGA CGATGCCAGC
CGAGCCCTTA TGGGTTCGAA CATGCAGAGG CAGGCCGTCC CGCTTCTGAA AGCGGAAGCA
CCCTTTGTTG GAACTGGAAT GGAATGGGAA GCAGCGAAAA ATTCTGGTTA TGTCACTCTC
GCAGAACACG ATGGAATAGT GAAAGAGGTT GACGCCGCCA GAATCGTTGT TCACAGAACA
GACGAGAATG GAAATCTCAT GTACGATGAT AAGGGCAATC CAGTGGTTGA TGAATACAGA
CTTCTAAAAT TTGTGAGATC CAACCAGGAT ACGATGATAA ATCAAAAACC CATTGTCAAC
GAAGGCGATT TTGTGAAGAA GGGTGATCCC ATAGCCGACG GTCCGGCAAC CGACATGGGA
GAACTGGCAC TCGGAAGGAA CATCCTCGTC GCCTTCATGC CATGGGAAGG TTACAACTAC
GAGGACGCTA TTCTCGTGAG TCAGGAGCTT CTTGAAGAAG ACGTTTTCAC GTCGATCCAC
ATAGAAGTTT ATGAAACTCA AGCAAGAGAA ACGAGGCTCG GTCCTGAAGA GATCACCGCT
GATATACCGA ACGTGAGCAA AGAACTCCTG AAAAATCTCG ACGAGAACGG AATCATCAGA
GTTGGAGCGT ACGTTGTGAG TGACTATGGA GTGGGTTCTC AGGCAATACT GGTTGGAAAG
GTGACACCGA AAGGTGAAGG AGACACAACA CCAGAAGAGA AGATCATCAG ATCTGTTTTT
GGTGAACGTG GAAGAGACGT GAAGGATACA TCTCTCAGGC TGCCTCACGG GGTTGAGGGA
AGAGTTATAA GGGTCGATGT TTACGATCAA AACGATATAG CAGAACTGGG AGCGGGAGTT
TTGAAACTCG TCAGGGTGTA CGTCGCCTCA AGAAAGACGC TCGACATCGG AGACAAGCTC
GCGGGACGCC ACGGAAACAA AGGTGTTGTC TCAAACATAC TTCCAAAAGA AGACATGCCG
TTCCTACCCG ATGGAACACC GGTTCAGATG GTACTGAACC CGCTGGGAAT ACCCTCACGT
ATGAACGTCG GTCAGATTCT GGAAACGCAC CTTGGATGGC TCGCCAAACT AACTGGAAAA
TGGTTTGCAA CACCTGTTTT CGAAGGGGCG AAAGAAGACG AAATTCTCAG ACCGCTCTAC
GAAGAAAGGA AGAAGAGGGG TCTTCACCTT GGAGACGACG AAAACAACCC GAATGGAAAA
GTGGTTCTCA GAGACGGAAG AACGGGAGAA CCCTTCGACA ATCCTGTGGT GGTCGGTTAC
ATGTACATGC TGAAGCTCGT TCATATAGCA AAAGAAAAGA TTCATGCAAG ATCCACAGGA
CCTTACTCTC TCATTCACCA GCAGCCTCTC GGAGGAAAGT CTCACTTCGG TGGACAGAGG
CTTGGAGAAA TGGAGGTCTG GGCTCTGGAA GCGTACGGAG CTGCTCATAC TCTCGCGGAG
ATGCTCACCA TAAAATCCGA CGACATAAAA GGAAGAAACG AAGCCTACAA AGCCATACTG
AAAAACATGA ATATACCTGA ACCTGGTGTT CCCGAAAGCT TTAGGGTTCT CATCAAAGAA
CTCAGAGGTC TCGCGCTCGA TGTGAGACTC TATGATGAGA ACGGTAACGA AATAGATATC
GACAAGTACT GA
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| Protein sequence | MKEISCGRRT RVSFGKTQEP LPIPDLVEIQ KISYRRFLEE GLLEVLKKFS PIYSQATRSD
LKKSDRGFAL EFVSTRIGEP VVDPLECKAK GLTYSVPIYA TARLTDMKSG EMKEEEVFLG
YIPYMTDRGT FIINGAERVV VNQIVVSPGL YFSSEYIDRE EYGGYFLPSR GAWLEVILDP
YDGVLYAGLD GKKVNLFLFL KTIGYEKDED ILSLYPTYLD ADDEDSLLLH VGSILLEDIY
DGDRKIAEKW DILTKDLAER ILMIDDINQI KIVHPIAQNT FEKMLELVSS SGEEGEEEEE
KTKIYGLNEV TVVDAYLEIF RRLRPEELPR INAAKRYLHD LFFNPERYDL SEVGRYKVNE
RLRNAYIRYL IEVEGEDPEE ARKKVYNENS LVLKPLDIVL ASRILFDYFE RRYVNDFEID
SYELRNLIRI FKEEYLEKRK TASYDLRKLV SVFRRNYGVT SDLSVLAAIR YISNINKELP
SIPFDTKDHL GNKRVRTVGE LVQREFERLF ARAQKAIQER LTLINSLSKV SIQSLINIKS
IISTVNQFFA MNQLSQFMDQ VNPLSELTHK RRVSAVGPGG LRRESKVFEA RNVHYSQYGR
LCPIETPEGA NIGFITSLAI YTKIDEYGFL MTPYRKVVNG KVTDEVVYLR ANEEEDFKIV
PATTPVDEEG NIIPERVVAR VGEDIRLVPR EEVDFMDVST KQPFSVSASL IPFLEHDDAS
RALMGSNMQR QAVPLLKAEA PFVGTGMEWE AAKNSGYVTL AEHDGIVKEV DAARIVVHRT
DENGNLMYDD KGNPVVDEYR LLKFVRSNQD TMINQKPIVN EGDFVKKGDP IADGPATDMG
ELALGRNILV AFMPWEGYNY EDAILVSQEL LEEDVFTSIH IEVYETQARE TRLGPEEITA
DIPNVSKELL KNLDENGIIR VGAYVVSDYG VGSQAILVGK VTPKGEGDTT PEEKIIRSVF
GERGRDVKDT SLRLPHGVEG RVIRVDVYDQ NDIAELGAGV LKLVRVYVAS RKTLDIGDKL
AGRHGNKGVV SNILPKEDMP FLPDGTPVQM VLNPLGIPSR MNVGQILETH LGWLAKLTGK
WFATPVFEGA KEDEILRPLY EERKKRGLHL GDDENNPNGK VVLRDGRTGE PFDNPVVVGY
MYMLKLVHIA KEKIHARSTG PYSLIHQQPL GGKSHFGGQR LGEMEVWALE AYGAAHTLAE
MLTIKSDDIK GRNEAYKAIL KNMNIPEPGV PESFRVLIKE LRGLALDVRL YDENGNEIDI
DKY
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