| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0461 |
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| Symbol | |
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| ID | 5171204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 448235 |
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| End bp | 453307 |
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| Gene Length | 5073 bp |
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| Protein Length | 1690 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640562965 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_001244061 |
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| Protein GI | 148269601 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAATGT CCTCTTTCAA GAGGAAGATA AAGGCAATTC AGATAAAGAT AGCCTCTCCA
GAAGTGATAA GAAGCTGGTC TGGAGGAGAG GTCAAGAAAC CAGAAACGAT CAACTACAGG
ACATTCAAGC CCGAGAGAGA CGGCCTTTTC TGTGAGAGGA TTTTTGGTCC TGTGAAGGAC
TACGAATGTG CCTGTGGTAA GTACAAGGGG AAGAAATACG AAGGTACCGT CTGTGAAAGG
TGTGGAGTCA GAGTCGAATC CAGAGAAGCC AGGAGAAAAA GGATGGGGCA CATAGAACTG
GCAGCACCCG CTGTGCACAT CTGGTACCTC GAGAGCATAC CGAGTGTCCT TGGAACACTC
TTGAACATGA GCACTTCAGA CCTGGAAAAC ATCATCTACT ACGGCAGCCG CCGTGTCATA
GAAAGGGCTT TCATTGTGAC TGATCCCAAA GATACTCCGT TCTCCCAGGG GGACGTGATC
TACGAGACCG AGTACAGGAT ATACAGGAAA AAGTGGGATT TCGAAGTTGA GCAGGCGTTC
GTGGTGAAGA ATCCAAAATC TCCTGTTCTT TCTGATATTG ATGGAGAAGT GACTTTGAAG
ACAGAAAAGT CCATCACAGG AAGGGAAATC ACCTGGATCA TAGTGAAGAA CATCACCAGA
GCCACACACA CGGTGCTCCC TGGAATGATT CTCGTTGTGA AAGATGGTCA GGAAGTGGAA
AAAGGACAGG ATCTGACGAA AGAAATGACA ATCGACCCTG TTTACGCTCC GTTTGACGGT
CACGTGGAAA TAGATGAACT TTCGAATACT ATTACGTTGA AACCTCTCAC AACCAGTAAG
GATCAGCCGG TTGTTTTCAC GGCTCCTTAC GGAGCAAAGA TTCTTGTTTC GAACGGCCAG
AAGGTGAAAA AAGGTGATCA GATCACGACT TCTACCAGCC TCCCATCCGT CAAATCGAGC
ATATCTGGTA CAGTGAGATT TGGTTCCAAC CTCAACATAA GAGCGCTTGA AGACGGAAAC
TTCGAAGTGC TCTCCACCGG TGAAGTCTAT GTAGAACAGG TTATAGAGGA GAGAAAATAT
CCTGTCTTTG AAGGAGCGCT TGTCTACGTT AACAACGGCG ACCAGGTGAA GAAAGGGGAT
CACTTAGCTG ACAGATTCCT CTTCGAGGAA GAGTATCTCT CTGCCACCGA GTACAAAATC
TTCGAGTCTC ACTATCCAAC CATGTTCGAT GTTGAAGAGA GAACGGAAAA CGACAGACCG
ATCGTGGTCA TAACGGATAT AGATCCCGAG GTTTCCAAAG AGACAGGCTT GAAAGTTGGC
GATATAGTCA CAGAAAACGA GTACGAAGCG TATCTTCAGA TATATCCAGA AAAGATAGTG
GCTGATGCCG GAGCGCAGGC GATAAAGAAA CTGCTTCAGA ATCTGGATCT GGAAGCGCTT
CAGGCGGAAA TCGAAGCGGA ACTCAAAAAG TTACCTTCTT CCAGCTCGAA GGCGATAAAG
CTCAGAAGAA GGTTGAAGAT GGTGAAGGAT TTCCTGAAAT CTGGCAACAA ACCCGAATGG
ATGGTTCTTG AGGTCGTTCC CGTGATTCCA CCCGATCTCA GGCCGATGAT ACAGATTGAG
GGAGGAAGGT TCGCCACAAC AGATCTCAAC GAACTTTACA GAAGACTCAT AAACAGAAAC
AACAGACTCA AAAAACTCCT GGAACTCGGG GCACCTGAGA TCATTCTGAG AAACGAGAAA
AGAATGCTTC AGGAAGCGGT TGATGCTCTC ATTCACAACG GCTCTGATTC GGAGGGAAAG
AGAAGCAGAA GAGCCGTTTT GAAAGACAGA AACGGCAGGC CTCTGAAATC GCTCACCGAT
CTCCTGAAGG GAAAGAAGGG AAGGTTCAGA AGAAACCTGC TTGGAAAGCG TGTGGACTAC
TCTGGAAGAG CGGTCATTGT CGTGGGACCG CATCTGAAAA TACACCAGTG CGGTATTCCA
AAGAAAATGG CAATGGAGCT CTTCAAACCG TTTGTTCTGG CGAAACTTCT TGGAGAGGGT
TCTTCCAGCA AAACCATGAG AAAGGTCAAA AAAGCGATCA TAGAAAAAGA GATGCCGGAA
GCTTGGGAAG TGCTCGAAGA AGTGATAAAG GGAAGCGTTG TTCTTTTGAA CAGAGCCCCA
ACACTCCACA GAATGTCGAT CCAGGCGTTT GAACCAAAAC TCGTCGAAGG AAACGCCATA
CAGCTTCATC CCGTTGTGTG TCCGCCTTTC AACGCGGACT TCGACGGTGA CCAGATGGCG
GTTCATGTAC CGCTTTCAGC GGCAGCCCAG GCAGAGGCGA GATTTCTCAT GCTTTCGAGA
TACAACATCA TCTCCCCAGC ACATGGAAAA CCGATTTCGC TGCCGACGCA GGATATCATC
ATAGGTTCTT ACTACCTCAC GACGGTCAGT AAAGAATTCG ACTCACTGAA GGAAGAAGAT
GTGAAATGGA AGTTCTCTTC ACCCGAAGAG GCAATGCTGG CTTACCACCT TGGATTCATA
AAACTTCACA CTCCGATTCT GATAAAGGTC GTTATCAACG GTGAGGAAAA ACGAATAAAG
ACGACACTGG GAAGGGTAAT CTTCAACAGC ATCCTTCCGG AGGATTTGAG GGATTACAAT
AGAATTTTCG ACAAAAAACA GATAAACACC CTCGTCTATG AAACGTTCAA GAGACACGGT
ATAGACAGAG CGGCAGATCT TTTGGATGAC ATAAAAGACA TCGGCTTCCA CTACGCAACC
GTTTCCGGGC TGACTCTCTC ACTGAAGGAT CTGAAGATAC CACCAGAGAG AGATGAGATT
CTCAGAAAGA CCTGGGAGAA GGTCAGAATA ATCGAAGAGA ATTACGAAAA GGGTTTCTTG
ACAGAGGAGC AGAGAAAGAG CGAAATCATA CGACTCTGGA TGAGTGTGAC AGAGGAGATC
ACAAAGCTCA CATCCAGAAC ACTTGCAGAG GATCCGTTCA ACCCCATATA CATGATGGTG
AACTCTGGTG CCAGAGGTAA CATAGATCAG GTGAAACAAC TCGCTGGTAT CAGAGGTTTG
ATGATCAAGG CGTACGACCC GAGATCCAGG GAAATAAAAT CCAAGATCTT CAAGGGTCAG
GCGATACACG AAGCACTCAC CTTCGATTAC CCGGTTGATA AGAACCTCAG AGAGGGCGTT
GACATCCTGC AGTTCTTCAT ATCCACCTAC GGTGCCAGAA AAGGACAGGT TGACACGGCA
ATGAACACAT CCTTCGCGGG ATATCTGACG AGGCGTCTTG TGGATGTGGC CCAGAGTGTT
ACAGTAGCAG AACCCGACTG TGGAACCCAC GAGGGAATCA GAGCTATGGA CCTGATAAAA
GAAGGAACAG TTGTAGAAAA GATGAACGAA TTCCTCTTTG GTAGAGTGCT CGCAAAGGAT
GTACTTGATC CAGAAACAAA AGAAGTTTTG AAGAATCCAG AAACGGGCAA GGAGTACACG
AGAAACACCA TGCTCACGGA CGACGACGCG AATTTCCTGG CTTCTTACAA GAAGATGGTT
GATGTTGTGA GATACGAAGA GATAGACATA ACAGAACTCT CACTCCCCAA CATGTACGCT
GAAATTGCGG AACCCGTTGG AGAGTACGAA GAAGGAACGG AACTCACCTG GGATGTGGTA
AAAGCCGCTA AGAACGAAGG GAAATACCGC ATAAAGGTGA AGGTCTATCC TGTCGTTGGA
ACCGTTTACG CGGAGGAGGA ACCTTTGTAC GATAAAAAAG GTGAAAGACA GCTTCTTGTG
TACCAGGAAG TGATAAACGA GATTGTGGCG AAAATGCTCG AAGAAAATGG AATAGAAAAA
GTTCCCGTGA GACCCGATAT CATTGTGAGA TCACCTCTCA CCTGTGAGTC TGAGTACGGC
GTCTGCGCTG CCTGCTACGG TATGGATCTT TCCAACCACA AGATAGTGAA CGTCGGTGAG
TCGGTGGGAA TCGTGGCCGC TCAGTCCATA GGAGAGCCCG GCACACAGCT CACGATGAGG
ACTTTCCACG TTGGAGGAGT CATGGGTGCG AGCGACATCG TCAGCGGTCT CACAACTGTG
GAGAAGACGT TCGAACCGTA CGCGTTCTTG AGAGAAGAAA AGAGCGGTGG AAAGAAAGAA
ATCAGAAAAT ACTATGGATC CGAATCGATT CTGTGTGAAG TCGATGGTTT CGTGAAAGAC
ATAGCAACCG ACGAGAGCGG TAGAACGGTG ATTTACGTCG AGGATTACGC CGGTAACATC
CACGCTTACA AAGTACCGAA GAGAGCGAAA GTAAGGGTAG AGAAAGGCCA GAAAGTCCTG
AGAGGAGAAA CCCTCACCAG CGGCGCCATT GTGTGGTGGA AACTCCTGGA GCTCGAATCA
GAAAAAGGTG TAATGACGGC GATGAATCTT TTGAAGATCA TAAAGAACGC CTACGTCCAG
CAGGGTGTGA GTATACACGA CAAGCACTTC GAGATCATAT TCAAACAGAT GCTAAGCATG
GCAACGATCG TCGATCCTGG AGACAGCGAT TATCTACCGG ACCAGCTTGT ACCACTTGTG
GATATAAAGA GATTCAACAG GGAAATCCTC GAAGGAAATG CGAAAGTGGA AGAGAACAGG
AAGTGGGTCA TAGGAAAGAC GCTCGCAAAG AGGATCATCG CGGAAACAGA AGAGGGAGAA
CTCGTGGAAC TCGCGCAAAA AGGCGATGAA GTGACCGAGG AACTTTTGAA GAAGATCATA
GAAGCGGGAA TAAAAGAGAT CGACGTCTTC GAAAAAGATA AAGTTGTGAC GTACCAGATT
CTTCCGAAGG AACCTATCAA GTACAAGAGA AGACTCCTGT CGCTCAAGAA AGCGGCTCTT
AACTACCCCG GCTGGCTCAG CGCGGCTGCG TTCGAAGAAA CCGCATGGGT GCTGACTGCG
GCGGCGATCG AAGGGAAGGT CGATCCACTC ATTGGATTGA AGGAAAACGT GATCGTTGGT
CAGCTGATAC CCTCAGGAAC GGGGCTCGAC GTTTTTGCGG GGATTCAGGT GGAAGAAACC
CCAAGGGCCG CGGTGGAAGA AGAACTCGCG TGA
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| Protein sequence | MPMSSFKRKI KAIQIKIASP EVIRSWSGGE VKKPETINYR TFKPERDGLF CERIFGPVKD
YECACGKYKG KKYEGTVCER CGVRVESREA RRKRMGHIEL AAPAVHIWYL ESIPSVLGTL
LNMSTSDLEN IIYYGSRRVI ERAFIVTDPK DTPFSQGDVI YETEYRIYRK KWDFEVEQAF
VVKNPKSPVL SDIDGEVTLK TEKSITGREI TWIIVKNITR ATHTVLPGMI LVVKDGQEVE
KGQDLTKEMT IDPVYAPFDG HVEIDELSNT ITLKPLTTSK DQPVVFTAPY GAKILVSNGQ
KVKKGDQITT STSLPSVKSS ISGTVRFGSN LNIRALEDGN FEVLSTGEVY VEQVIEERKY
PVFEGALVYV NNGDQVKKGD HLADRFLFEE EYLSATEYKI FESHYPTMFD VEERTENDRP
IVVITDIDPE VSKETGLKVG DIVTENEYEA YLQIYPEKIV ADAGAQAIKK LLQNLDLEAL
QAEIEAELKK LPSSSSKAIK LRRRLKMVKD FLKSGNKPEW MVLEVVPVIP PDLRPMIQIE
GGRFATTDLN ELYRRLINRN NRLKKLLELG APEIILRNEK RMLQEAVDAL IHNGSDSEGK
RSRRAVLKDR NGRPLKSLTD LLKGKKGRFR RNLLGKRVDY SGRAVIVVGP HLKIHQCGIP
KKMAMELFKP FVLAKLLGEG SSSKTMRKVK KAIIEKEMPE AWEVLEEVIK GSVVLLNRAP
TLHRMSIQAF EPKLVEGNAI QLHPVVCPPF NADFDGDQMA VHVPLSAAAQ AEARFLMLSR
YNIISPAHGK PISLPTQDII IGSYYLTTVS KEFDSLKEED VKWKFSSPEE AMLAYHLGFI
KLHTPILIKV VINGEEKRIK TTLGRVIFNS ILPEDLRDYN RIFDKKQINT LVYETFKRHG
IDRAADLLDD IKDIGFHYAT VSGLTLSLKD LKIPPERDEI LRKTWEKVRI IEENYEKGFL
TEEQRKSEII RLWMSVTEEI TKLTSRTLAE DPFNPIYMMV NSGARGNIDQ VKQLAGIRGL
MIKAYDPRSR EIKSKIFKGQ AIHEALTFDY PVDKNLREGV DILQFFISTY GARKGQVDTA
MNTSFAGYLT RRLVDVAQSV TVAEPDCGTH EGIRAMDLIK EGTVVEKMNE FLFGRVLAKD
VLDPETKEVL KNPETGKEYT RNTMLTDDDA NFLASYKKMV DVVRYEEIDI TELSLPNMYA
EIAEPVGEYE EGTELTWDVV KAAKNEGKYR IKVKVYPVVG TVYAEEEPLY DKKGERQLLV
YQEVINEIVA KMLEENGIEK VPVRPDIIVR SPLTCESEYG VCAACYGMDL SNHKIVNVGE
SVGIVAAQSI GEPGTQLTMR TFHVGGVMGA SDIVSGLTTV EKTFEPYAFL REEKSGGKKE
IRKYYGSESI LCEVDGFVKD IATDESGRTV IYVEDYAGNI HAYKVPKRAK VRVEKGQKVL
RGETLTSGAI VWWKLLELES EKGVMTAMNL LKIIKNAYVQ QGVSIHDKHF EIIFKQMLSM
ATIVDPGDSD YLPDQLVPLV DIKRFNREIL EGNAKVEENR KWVIGKTLAK RIIAETEEGE
LVELAQKGDE VTEELLKKII EAGIKEIDVF EKDKVVTYQI LPKEPIKYKR RLLSLKKAAL
NYPGWLSAAA FEETAWVLTA AAIEGKVDPL IGLKENVIVG QLIPSGTGLD VFAGIQVEET
PRAAVEEELA
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