| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0342 |
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| Symbol | polC |
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| ID | 5170467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 323447 |
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| End bp | 327550 |
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| Gene Length | 4104 bp |
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| Protein Length | 1367 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640562846 |
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| Product | DNA polymerase III PolC |
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| Protein accession | YP_001243947 |
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| Protein GI | 148269487 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGAAAA TTGAAAATCT GAAATGGAAA GATGTAACAT TCGAGAGTAT AGAGATAGAT
CCCGACGCGG GTGTGGTTCT CGTTTCTGTG GAAAAATTTT CCTCCGAAGT AGAGAATCTT
GTTAGCTTAC TCGAAAAGGA AACGAGGTTT CGAGTCATCG TGAACGGCGC TCAAAAAAGT
AACGGGGATC TAAAGGGAAA GATACTTTCT CTTCTCAACG GTAACGTCCC CTACATAAAG
GATGTTGTTT TCGAAGGAAA CAGACTGATT CTGAAAGTGC TTGGAGATTT CGCACGGGAC
AGGATCGCCT CGAAACTCAG AAGCACGAAA AAACAGCTCG ATGAATTACT GCCTCCCGGA
ACGGAGATCA TGTTTGAGGT CGTGGAGCCT CCGGAAGATC TTTTGAAAAA GGAAGTACCA
CAACCAGAAA AGAGAGAAGA ACCGAAGGGT GAAGAATTGA AGATCGAGGA TGAAAACCAC
ATCTTTGGAC AGAAACCCAG AAAGATCGTC TTCACCCCCT CAAAAATCTT TGAGTACAAC
AAAAAGACAT CGGTGAAGGG CAAGGTCTTC AAAATAGAGA AGATCGAGGG GAAAAAAACG
GTCCTTCTGA TTTACCTAAC GGACGGAGAG GATTCTCTGA TCTGCAAGGT CTTCAACGAC
GTTGAAAAGG TCGAAGGAAA GATATCGTTG GGAGACGTCA TCGTTGCCAC AGGAGACCTC
CTTCTCGAAA ACGGAGAGCC CACCCTTTAC GTGAAGGGAA TCACAAAACT TCCCGAAGCG
AAAAGGATGG ACAACTCTCC AGTCAAGAGG GTGGAGCTCC ACGCCCACAC TAAGTTCAGC
GATCAAGACG CGATAACGGA TGTGAACGAA TATGTGAAAC GAGCCAAGGA ATGGGGCTTC
CCCGCGGTAG CTCTCACGGA TCATGGGAAC GTTCAGGCCA TACCTTACTT CTACGACGCA
GCGAAAGAAG CTGGAATAAA GCCCATCTTC GGTATCGAAG CGTACTTAGT GAGCGACGTG
GAGCCCGTAA TAAGGAACCT CTCCTACGAT TCATCGTTCG AAAATGCCAC ATTCGTCGTC
CTCGACTTCG AGACAACGGG CCTCGACCCT CAGGTGGACG AGATCATCGA GATAGGAGCG
GTGAAGATAC AGGACGGCCA GATAGTGGAC GAGTACCACA CTCTCATAAA GCCTTCCAGG
GAGATCTCAA GAAGAAGTTC GGAGATCACC GGAATCACTC AAGAGATGCT GGAAAACAAG
AGAAGCATCG AGGAAGTTCT ACCGGAATTC CTCGGTTTTC TGGAGAATTC CATCATCGTT
GCCCACAACG CCAACTTCGA CTACAGATTT CTGAGGCTGT GGATCAAAAA AGTGATGGGG
TTGGACTGGG AAAGACCCTA CATAGATACG CTCGCCCTCG CAAAGTCCCT TCTAAAAATG
AGAAGCTACT CTCTGGATTC CGTTGTGGAA AAGCTCGGAT TGGGTCCGTT CCGTCACCAC
AGGGCCCTGG ATGACGCGAG GGTCACCGCT CAGGTTTTCC TCAGGTTCGT TGAGATGATG
AAGAAGATCG GGATCACGAA GCTTTCAGAA ATTGAGAATT TGAAGGATAC GATAGACTAC
ACCGCGTTGA AACCCTTCCA CTGTACGATC CTCGTTCAGA ACAAAAAGGG ATTGAAAAAC
CTCTACAAAC TGGTTTCTGA TTCCTATATA AAGTACTTCT ACGGTGTTCC GAGGATCCTC
AAAAGTGCGC TCATCGAAAA CAGAGAAGGA CTGCTTGTGG GAAGCGCGTG TATCTCCGGT
GAGCTCGGAC GTGCCGCCCT CGAAGGGGCG AGTGATTCAG AACTCGAGGA GATCGCAAAG
TTCTACGACT ACATAGAAGT CATGCCGCTC GACGTTATAG CCGAAGACGA AGAGGACTTA
GACAGAGAAA GGCTGAAAGA AGTGTACCGA AGACTCTACA GAATAGCGAA AAAGCTGAAC
AAATTCGTCG TCATGACCGG TGATGTTCAT TTCCTCGATC CCGAAGATGC CAGGGGCAGA
GCTGCACTTC TGGCACCTCA GGGAAACAGA AACTTCGAGA ATCAGCCCGC ACTCTACCTC
AGAACGACCG AAGAAATGCT CGAAAAGGCG ATGGAGATAT TCGAAGATGA AGAGATCGCG
AGGGAAGTCG TGATAGAGAA TCCCAACAGA ATAGCCGATA TGATCGAGGA AGTGCAGCCG
CTCGAGAAGA AGCTCCACCC GCCGATCATA GAGAACGCCG ATGAAATAGT GAGAAGCCTC
ACCATGAAGA GGGCGTACGA GATCTACGGT GATCCACTTC CCGAAATCGT TCAGAAGCGA
GTGGAAAGGG AACTGAACGC CATCATAAAT CATGGATACG CCGTTCTCTA TCTCATCGCT
CAGGAGCTCG TTCAGAAATC TATGAGCGAT GGTTACGTGG TTGGATCCAG AGGATCCGTT
GGATCTTCAC TTGTGGCCAA TCTCCTCGGG ATAACCGAGG TGAATCCTCT GCCACCGCAC
TACAGGTGTC CGGAGTGCAA ATACTTCAAG GTTGTCGAAG ACGACAGATA CGGAGCGGGT
TACGACCTTC CCGATAAAAA ATGCCCAGTG TGCGGTGCTC CTCTCAGAAA AGACGGTCAC
GACATACCGT TTGAAACGTT CATGGGGTTT GAAGGTGACA AGGTCCCCGA CATAGATCTT
AACTTCTCAG GAGAGTATCA GGAACGTGCT CATCGCTTCG TGGAAGAACT CTTCGGTAAA
GACCACGTCT ACAGGGCGGG AACCATAAAC ACCATCGCGG AAAAAAGCGC GGTGGGTTAC
GTGAGAAGCT ACGAAGAGAA AACCGGAAAG AAGCTCAGAA AGGCGGAGAT GGAAAGACTC
GTTTCCATGA TCACGGGAGT GAAGAGAACA ACGGGCCAGC ACCCAGGAGG ACTCATGATC
ATACCGAAAG ACAAAGAAGT CTACGATTTC ACTCCCATAC AGTATCCAGC CAACGATAGA
AACGCGGGAG TGTTCACCAC ACACTTCGCG TACGAAACGA TCCACGACGA TCTGGTGAAG
ATAGATGCAC TCGGTCACGA TGATCCTACT TTCATCAAGA TGCTAAAAGA CCTCACCGGA
ATTGACCCTA TGACGATTCC CATGGATGAC CCCGACACGC TCGCCATATT CAGTTCTGTG
AAGCCCCTCG GTGTGGATCC AGTTGAGCTG GAGAGCGACG TGGGAACTTA CGGAATCCCG
GAGTTTGGAA CCGAGTTTGT GAGGGGAATG CTTGTTGAGA CGAGACCGAA GAGTTTCGCC
GAGCTTGTGA GGATCTCAGG ACTGTCACAC GGTACGGACG TCTGGTTGAA CAACGCGCGC
GACTGGATAA ACCTCGGCTA CGCCAAGCTC TCCGATGTTA TTTCGTGTAG GGACGACATC
ATGAACTTCC TCATACACAA GGGAATGGAA CCTTCTCTTG CTTTCAAGAT CATGGAAAAC
GTCAGGAAGG GAAAGGGTAT CACAGAAGAA ATGGAGAGTG AAATGAGAAA GTTGAAGGTT
CCAGAGTGGT TCATCGAATC ATGCAAGAGG ATCAAATATC TCTTTCCGAA GGCTCACGCT
GTGGCTTATG TGAGTATGGC CTTCAGAATC GCTTACTTCA AGGTTCACTA TCCTCTTCAG
TTTTACGCGG CGTACTTCAC GATAAAAGGT GATCAGTTTG ATCCGGTTCT CGTCCTTAAA
GGAAAGGAAG CCATAAAGAG GCGCTTGAGA GAACTCAAAG CGATGACCGG TAAAGATGTT
CAGAAGAAAA ACGAAGAGAG CGTTCTGGAA GTCGTTCTGG AAATGATACT GAGAGGTTTT
TCCTTCCTAC CACCCGACAT CTTCAAATCC GACGCGAAGA AATTTCTCAT AGAAGGAAAC
TCGCTGAGAA TTCCCTTCAA CAAACTTCCA GGACTGGGTG ACAGTGTGGC CGAATCGATC
GTCAGAGCCA GGGAAGAAAA ACCGTTCACT TCGGTGGAAG ACCTCATGAA GAGAACCAAA
GTCAACAAAA ATCACATAGA GTTGATGAGA AGCCTGGGTG TTCTCGGAAG CCTTCCAGAA
ACGGAACAGT TCACACTTTT CTAA
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| Protein sequence | MEKIENLKWK DVTFESIEID PDAGVVLVSV EKFSSEVENL VSLLEKETRF RVIVNGAQKS
NGDLKGKILS LLNGNVPYIK DVVFEGNRLI LKVLGDFARD RIASKLRSTK KQLDELLPPG
TEIMFEVVEP PEDLLKKEVP QPEKREEPKG EELKIEDENH IFGQKPRKIV FTPSKIFEYN
KKTSVKGKVF KIEKIEGKKT VLLIYLTDGE DSLICKVFND VEKVEGKISL GDVIVATGDL
LLENGEPTLY VKGITKLPEA KRMDNSPVKR VELHAHTKFS DQDAITDVNE YVKRAKEWGF
PAVALTDHGN VQAIPYFYDA AKEAGIKPIF GIEAYLVSDV EPVIRNLSYD SSFENATFVV
LDFETTGLDP QVDEIIEIGA VKIQDGQIVD EYHTLIKPSR EISRRSSEIT GITQEMLENK
RSIEEVLPEF LGFLENSIIV AHNANFDYRF LRLWIKKVMG LDWERPYIDT LALAKSLLKM
RSYSLDSVVE KLGLGPFRHH RALDDARVTA QVFLRFVEMM KKIGITKLSE IENLKDTIDY
TALKPFHCTI LVQNKKGLKN LYKLVSDSYI KYFYGVPRIL KSALIENREG LLVGSACISG
ELGRAALEGA SDSELEEIAK FYDYIEVMPL DVIAEDEEDL DRERLKEVYR RLYRIAKKLN
KFVVMTGDVH FLDPEDARGR AALLAPQGNR NFENQPALYL RTTEEMLEKA MEIFEDEEIA
REVVIENPNR IADMIEEVQP LEKKLHPPII ENADEIVRSL TMKRAYEIYG DPLPEIVQKR
VERELNAIIN HGYAVLYLIA QELVQKSMSD GYVVGSRGSV GSSLVANLLG ITEVNPLPPH
YRCPECKYFK VVEDDRYGAG YDLPDKKCPV CGAPLRKDGH DIPFETFMGF EGDKVPDIDL
NFSGEYQERA HRFVEELFGK DHVYRAGTIN TIAEKSAVGY VRSYEEKTGK KLRKAEMERL
VSMITGVKRT TGQHPGGLMI IPKDKEVYDF TPIQYPANDR NAGVFTTHFA YETIHDDLVK
IDALGHDDPT FIKMLKDLTG IDPMTIPMDD PDTLAIFSSV KPLGVDPVEL ESDVGTYGIP
EFGTEFVRGM LVETRPKSFA ELVRISGLSH GTDVWLNNAR DWINLGYAKL SDVISCRDDI
MNFLIHKGME PSLAFKIMEN VRKGKGITEE MESEMRKLKV PEWFIESCKR IKYLFPKAHA
VAYVSMAFRI AYFKVHYPLQ FYAAYFTIKG DQFDPVLVLK GKEAIKRRLR ELKAMTGKDV
QKKNEESVLE VVLEMILRGF SFLPPDIFKS DAKKFLIEGN SLRIPFNKLP GLGDSVAESI
VRAREEKPFT SVEDLMKRTK VNKNHIELMR SLGVLGSLPE TEQFTLF
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