| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1509 |
|---|
| Symbol | |
|---|
| ID | 4601210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 1457960 |
|---|
| End bp | 1458838 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639774284 |
|---|
| Product | transcriptional regulator, TrmB |
|---|
| Protein accession | YP_920909 |
|---|
| Protein GI | 119720414 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3398] Uncharacterized protein conserved in archaea |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.363784 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAGCA GGACCATGGA GAAAAGAGCT TTCCTGGCGT TGCTGCTACT GCTCAGCTCT
CTCTACGTCG CCGGGCTTTA CCGCTCGGAG GCCCAGCCGC CCGCGCTCGT CGTCCTAAGC
GGGTCGGCTA CCCTTAAGAG CTCGTCTTCG AGCAACGGGA CGCACCTCTA CGTGCTCTCG
GTGAGGGTTC CGCCCCTCTC GAAGCTGTCC GAAGAGACCA TTGCGTGCGT CTACAACGCC
GGGATAGCCT CCGCGAAGGC CTCTCTCGGC GTGGTGGAGG TTCGGGGCGG CGGGGACTAC
GCGTGCCTGA CCTACACCTT CGACAATAGG GGGCTCGGCT ACGTCGAGGA TACAGTGTCC
CTGGTAGTGG TGGAGCCTCC CCGCGCCGCA TCCCCGCCCG TAGCCGAGGT AGCGGTTGCC
GTGGCGGCGG TCGCCGCTAC CTCTTACCTC ACGCTAACCG AGAGCGGCAG GCAGAAGCTG
TTCGCAGCTC TCTCAGCGCC GGTAGCCTAC TACGTGGCGA AGCGCGAGGA CGTGCTGAGG
AGCGAGAAAA GGGTGAGGAT ACTGGAGTAC CTGAAGCAGA ACCCCGGGGC GAGTATGCGC
AGGATCTCCA GGGAGACGGG CGTAAGCTTC GGGGAGGTTC AGTGGCACCT CTCCATACTC
GAGCGCCTAG GCTACGTCCA GAGGGTTAGA ATCGGGAAGT ACACCGTGTA CTACCCGACG
GGGGTTCCCG CGGAGCGCTG GCTAGCCTGC TTCGCGGAGA GGGAGCTCGG GCTGAAGGTT
AAGCCTGGTG CGTTAGAGAA GGCTCTTCCA AGCCTCGAAG AGTACCTTGC CTTCAGGCAG
ATCCCCCTGG AAGCGTTGCG GTCAGCGCTG GGCTCCTAG
|
|---|
| Protein sequence | MKSRTMEKRA FLALLLLLSS LYVAGLYRSE AQPPALVVLS GSATLKSSSS SNGTHLYVLS
VRVPPLSKLS EETIACVYNA GIASAKASLG VVEVRGGGDY ACLTYTFDNR GLGYVEDTVS
LVVVEPPRAA SPPVAEVAVA VAAVAATSYL TLTESGRQKL FAALSAPVAY YVAKREDVLR
SEKRVRILEY LKQNPGASMR RISRETGVSF GEVQWHLSIL ERLGYVQRVR IGKYTVYYPT
GVPAERWLAC FAERELGLKV KPGALEKALP SLEEYLAFRQ IPLEALRSAL GS
|
|---|
| |