| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0295 |
|---|
| Symbol | |
|---|
| ID | 4601304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 262187 |
|---|
| End bp | 263464 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639773053 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_919708 |
|---|
| Protein GI | 119719213 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00215274 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCCG GAAATACTGT AGCAGGTAAA AGCAGTTTAG CAAGGGTGCT TGCATACATC
GTGATAGCTT TACTTATAGG CGCCTTCCTG GGCTACTTCC TGCGAGGATA CCCGGCACAG
CAACAGGCGG CTACCACGCA AACATCGGTA ACAACGATAC CTATAGGAGC GCTCGTTGAG
CTTTCTGGTG ATCTCTCGTC TTACGGTAAG AGAGACGAGC TAGCAATGCA GATAGCCATC
GAAGACGTTA ACAACTTCGC CGAGAAGATA GGCTCGCCGT ACAGGTTCAA GTTGCTCGTA
GAGGACTCCG GAACTAGCCC GGAGCAAGCC CTCTCGAGGA TTAAGACTCT GGCCGCGCAG
GGTGTACGCG CAGTTATAGG GCTAGAGGCC AGTAGCGAGG TAGCAGCAGT GAAGCAGTTC
GCTGACACGA ACCACGTAGT CGTTTTAAGC GTAGGATCGA CAGCTTTGTC GCTGGCAATC
CCCGGCGACT ACATACTAAG AGTTGTACCA CCAGACAGCG TGCAAAGCAA GGCTCTGGCC
CGCCTTATCT ACTCGCTGGG ATACCGGAAC GTGGCGGTGA TATACCGCAA CGACGCATGG
GGTGTAGGTC TCTTTGAAGG GTTCAGCGCG AGGTTCAAGG AGCTGGGAGG GAACGTGGCG
GGGGTTGCGT ACGACCCTGC GGCTAAGGAT CTCAGCGGTG AGGTGAACAG GCTCGCGGAC
ATAGCGGCTA GCATGGGGTC TAACACGGCG GTGCTCGCCA TAACGTTCGA GGACGACGGC
ATACAGATAG TGAAGCTAGC GGCCAGGAAC CCTGTCCTCT CCAAGCTCAA GTGGTTCGGC
ACAGACGGCG TGGCTCAGTC GACCAAGCTT GCAAGCGAAG CTGGGGAAGA GCTAATAGCT
CTGGGAGGCT TTCCGTGCAC GATATTCCAG CCTTCCGAGA ACCAGCGTCT AGCAGACTTC
GTGAACAGAT TCCGTAGTAG GAGCGGGGGC GAGGATCCAC ACGCGTACGC CATGAACGCC
TACGACGCAG TCTGGCTCGT AGCCCTATCG GTGATGCTTA CAGGCTCCTA CTCGGGAGAC
AAGCTACTAA GCACTATTCC ACTCGTCGCC CAGAACTTCA ACGGAATCAC GGGACCGCTC
ACGCTGGACG CAAACGGAGA CAGAGCTTCG GGAGACTACG CTATATGGCG CGTCGTTAAA
ACAGCAAACG GCTACGACTG GCAGATAATA GGATGGTACA GCGCGTCCTC CGATAGCGTT
ACAATCCAGG GAGGCTAA
|
|---|
| Protein sequence | MSAGNTVAGK SSLARVLAYI VIALLIGAFL GYFLRGYPAQ QQAATTQTSV TTIPIGALVE
LSGDLSSYGK RDELAMQIAI EDVNNFAEKI GSPYRFKLLV EDSGTSPEQA LSRIKTLAAQ
GVRAVIGLEA SSEVAAVKQF ADTNHVVVLS VGSTALSLAI PGDYILRVVP PDSVQSKALA
RLIYSLGYRN VAVIYRNDAW GVGLFEGFSA RFKELGGNVA GVAYDPAAKD LSGEVNRLAD
IAASMGSNTA VLAITFEDDG IQIVKLAARN PVLSKLKWFG TDGVAQSTKL ASEAGEELIA
LGGFPCTIFQ PSENQRLADF VNRFRSRSGG EDPHAYAMNA YDAVWLVALS VMLTGSYSGD
KLLSTIPLVA QNFNGITGPL TLDANGDRAS GDYAIWRVVK TANGYDWQII GWYSASSDSV
TIQGG
|
|---|
| |