Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tneu_1380 |
Symbol | |
ID | 6165523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermoproteus neutrophilus V24Sta |
Kingdom | Archaea |
Replicon accession | NC_010525 |
Strand | - |
Start bp | 1227995 |
End bp | 1228816 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641668536 |
Product | exosome complex RNA-binding protein Rrp42 |
Protein accession | YP_001794752 |
Protein GI | 171185833 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2123] RNase PH-related exoribonuclease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTCCA TCTCGCCGTA CGGCAAACGC TTTATCTCCT ACCTACGGAG GGAGCAGATC AAGAGGCTTC TAGCGACGAG ATACAGGGTA GACGGGAGAG AGCCGGAGAG AGTCAGAAGC GTAGAGATAC GAACAGGCGT TGTTAAAACA GCCGACGGCT CCGCCGAGGT GAAGCTCGGG AGGACACATG TAGTGGCTGG AGTAAAGGTG GGGCTTGGGC AGCCCTTCCC CGACGCCCCC GACGAGGGGG TGCTAGTCGT CAGCGCCGAG GTGTTGCCTC ACGCCTCGCC TTATACCGAG GTTGGGCCTC CAGACGAGTC GGCTATAGAG CTCGCCAGAG TTGTAGACCG CGGCATCAGG CACTGCGGCT ACGTGGACTT CAAGAAGCTA GCCGTGGAGG GGGGCAAGGC GTATATACTG TGGGTAGACC TATACGTCAT AAACGACGAC GGCAACTTGG TAGATGCCGC TAACCTAGCC GCTGTCGCCG CGCTGAAGAA CACGCAGCTA CCCGCCGTCG TTAAAGAGGA GCAGGGGGTT AAACTGGACC GCAATAACAA AACGCCGTTG CCCGTGGACT TAAACAAAGC GCCCATCGCG GTGTCTATCG GCAAAATAGG AAGCGTCCTC CTGCTCGACC CAACGTTGGA GGAGGAGCTC AGCTTAGACG GCCGTATAAC CTTCACGATA TCTGAGGACC GTATCGTGGC GGCGCAGAAG ACCATAGGCG CCTTCGCCCC CCAGGAGCTG GAGGCGGCGC TGGATCTTGC TTGGAAGGGG AGGGGCCAAT ACGCCGAGTT TCTAAAGAAC GCCGGCATCT AA
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Protein sequence | MASISPYGKR FISYLRREQI KRLLATRYRV DGREPERVRS VEIRTGVVKT ADGSAEVKLG RTHVVAGVKV GLGQPFPDAP DEGVLVVSAE VLPHASPYTE VGPPDESAIE LARVVDRGIR HCGYVDFKKL AVEGGKAYIL WVDLYVINDD GNLVDAANLA AVAALKNTQL PAVVKEEQGV KLDRNNKTPL PVDLNKAPIA VSIGKIGSVL LLDPTLEEEL SLDGRITFTI SEDRIVAAQK TIGAFAPQEL EAALDLAWKG RGQYAEFLKN AGI
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