| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_0103 |
|---|
| Symbol | |
|---|
| ID | 6164805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoproteus neutrophilus V24Sta |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010525 |
|---|
| Strand | - |
|---|
| Start bp | 88512 |
|---|
| End bp | 90701 |
|---|
| Gene Length | 2190 bp |
|---|
| Protein Length | 729 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641667270 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001793507 |
|---|
| Protein GI | 171184588 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1204] Superfamily II helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.297331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00614894 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAAA TCATGGCGGG GGTTTTCTCA CAGCCGAAGA GGAAAAATAC CCCCGCCCCG
GCGCCCCATG TGGAGGTTTC TGAGCTTCCC CTAGATGGGC GTTTGATCTC CGTGCTGAGG
GGGAGGGGGG TCCGGGAGCT CTTCCCCCCT CAGGTGGAGG CTGTCAAGGC GGGTCTCTTC
GACGGGAGGA GCGTGCTCCT CTGCACCGCC ACGGCCTCGG GCAAATCCCT CCTGGCCGAG
GTGGCGTCTG TGAAGGCGGC GTTGGAGGGG GGGATGGCGC TGTATGCCGT CCCGCTGAAG
GCGCTTGCCT ACGAGAAGCT GGTGCACTTC TCCCACTACG GCGGTCTGGC TAAGGTGGGC
GTCTCCACGG GGGACTTCGA CTCCGAGGAC AGGAGGTTGC ACGAGTACGA CGTGTTGGTT
GTGACATACG AGAAGCTGGA CAGCCTCCTG AGGCATAGGC CGGGGTGGCT GAGCTCTGTA
AAAACGGTGG TGGTGGACGA GATCCACTAC CTCGGCGACC CGAGGAGGGG GCCGGTGCTT
GAGTCTATCA TCGCCAAGCT TAAACACCTG GGCCTCAGGG CGCAGTTCAT CGGCTTAAGC
GCCACCGTGG GGAACGCCGC CGAGGTGGCG GAGTGGCTGG GGGCTAGGCT TGTGGCGTCC
AGCTGGAGGC CCGTCCCGCT GAGGGAGGGG GTCTACCACG GGGGGAGGAT ATACTACCCA
GACGGCACAT ATAGGCGGGT TGAGGCGGCG GGCGACGCCG AGGTTGCCCT GGCGGTGGAC
GCCGTGGCGG GCGGGGGACA GGCGCTTGTG TTCGCCAGTA GCAGATCCTC CACGGTGAGG
ATCGCCAAGG CGGTGGCTAA GGCCATCGCG GCCCACCCCG CCAGGCTGAT CGACGTGGCC
GAGGCGTCGA GGCTGGCCGG GGAGGTCGCC AGGGCCTCCT CCAGCAAGAT CATAGGGAGG
GAGCTCGCGG AGCTTGTGGC GCGGGGCGTG GCTTTCCACA ACGCCGGCTT GGAGCTGGAG
GTGAGGAGGC TGGTGGAGGA GGGCTTCAGG AGGGGGGTCG TCAAGGTGGT GGTGTCCACG
ACGACGCTGG CCGCGGGGGT GAACCTGCCG GCTAGGAGGG TCGTGGTGGC GGACTTCGAG
CGTTTTGACC CCGTGGTGGG GAGGGAGGAG ATCCCGGTTC TCGAGTATAA GCAGATGGCC
GGCCGCGCCG GCAGGCCGGG CCTCGACGCC GTGGGGGAGG CCGTCTTGGT GGCGAGGAGT
AAAAACGAGG TGGGCTACCT CATGGAGAGG TACGTCAGGG GGCAGGTGGA GGAGGTGAGG
TCCCACATCT TGGCCGGCCC CAACCTCAGG GCGCACGTCT TGGGGGCGGT GGGGGGCGGC
TACGCCCGGT CTATAGACGA GCTGGTGGAC TTCTTCTCCA ACACCCTGGG GTACCACCAG
GCGAGGACCG CCGTCAAGTC GGCTCTACTT CGGTCCAGGG TGGGGGCGGC CGTGGAGGAG
CTGGAGGAGT GGGGGTTCCT GGAGCGAGAC GGCGAGCGCG TATACGCGAC GGAGCTGGGG
AGGCAGGTGG CGAGGCTGTA TCTAGACCCC GAGACGGCCG CCAGATACAT CGAGCTTATA
AAGAGCTTGA GGGGGGGCAA CACGTCGGCG TATCTCTACG TCGTGCTCAC GGCGCGCGAC
TTCCCCAGGG TGAGGAGGGG GAGGGCGGAT AGGCGCGTGG CCGAGGAGGT CCTCTCCGTG
CTCGACGTGG AGGAGGACGA GGAGTTTGAG GAGGTGGTTA AGACCGCCTC GGTGCTGACG
GCGTGGATCG AGGAGGAGGA CGAAGACGCC ATATTCAACA GGTTCGAGGT GGCGCCGGGG
GATCTGCGGG TGTACATAGA CCTATTCGAG TGGCTTGGGA ACGCGGCGGC TAAGCTAGCC
GGTATGCTGG GCTTGGAGGA GCACAGGAGG GGGCTGGAGG TGGTGACGGC GAGGGTGATC
TACGGCGTTA GGGAGGAGTT GCTGGAGCTC GTGACTGCGC TGAGGGGCGT GGGGAGAGTT
AGAGCTAGGG CTCTCTACAA CTTCGGCTAC AGGACGGTTA AGGACTTGGC CAAGGCCTCC
GTCAGGGAGA TAGCCTCTCT GCCCGGCTTC GGCGAGAGGC TGGCCGAGTC CATCATCGAG
CAGGCCCGGC AGCTGGCTGG GCTATCGTGA
|
|---|
| Protein sequence | MSKIMAGVFS QPKRKNTPAP APHVEVSELP LDGRLISVLR GRGVRELFPP QVEAVKAGLF
DGRSVLLCTA TASGKSLLAE VASVKAALEG GMALYAVPLK ALAYEKLVHF SHYGGLAKVG
VSTGDFDSED RRLHEYDVLV VTYEKLDSLL RHRPGWLSSV KTVVVDEIHY LGDPRRGPVL
ESIIAKLKHL GLRAQFIGLS ATVGNAAEVA EWLGARLVAS SWRPVPLREG VYHGGRIYYP
DGTYRRVEAA GDAEVALAVD AVAGGGQALV FASSRSSTVR IAKAVAKAIA AHPARLIDVA
EASRLAGEVA RASSSKIIGR ELAELVARGV AFHNAGLELE VRRLVEEGFR RGVVKVVVST
TTLAAGVNLP ARRVVVADFE RFDPVVGREE IPVLEYKQMA GRAGRPGLDA VGEAVLVARS
KNEVGYLMER YVRGQVEEVR SHILAGPNLR AHVLGAVGGG YARSIDELVD FFSNTLGYHQ
ARTAVKSALL RSRVGAAVEE LEEWGFLERD GERVYATELG RQVARLYLDP ETAARYIELI
KSLRGGNTSA YLYVVLTARD FPRVRRGRAD RRVAEEVLSV LDVEEDEEFE EVVKTASVLT
AWIEEEDEDA IFNRFEVAPG DLRVYIDLFE WLGNAAAKLA GMLGLEEHRR GLEVVTARVI
YGVREELLEL VTALRGVGRV RARALYNFGY RTVKDLAKAS VREIASLPGF GERLAESIIE
QARQLAGLS
|
|---|
| |