Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmz1t_1084 |
Symbol | |
ID | 7084613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thauera sp. MZ1T |
Kingdom | Bacteria |
Replicon accession | NC_011662 |
Strand | + |
Start bp | 1182132 |
End bp | 1183244 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 643698100 |
Product | porin Gram-negative type |
Protein accession | YP_002354740 |
Protein GI | 217969506 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0141489 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAGAAGA ACTTGATCGC CCTTGCCGTT GCCGGGCTCG CCGCCCTGCC GGCCTTCGCG CAGTCCAATG TGACGATCTA CGGCCTCGTC GACATGGGCT ACAAGTGGTC GGGCGACAAT ATGGACGATC GCGTGTCCAG CCGGTCGGCG CTCGATTCGG GCATGAGTGC AGGAAGCCGC CTCGGCTTCA AGGGCACCGA AGATCTGGGT AACGGCATGA AGGCGGGCTT CGTGCTCGAG CAGGGCCTCA ATCTCGATAC CGGGACGCTC GGCCAGGGCG GTCGCGCTTT CGGGCGCCAG TCCTTCGTCA GCCTTGGCGG CGGCTTCGGG ACCGTCGCGC TCGGGCGCCA GTACCCGGCC GGCTACCTGC TGACGGCGAC GGTCGACCCC TTCGGCAGCG GCACCGCGGG GCAGTACAAC AGCGTCTACC TGACCGAATA CCGCTGGGAT AACGCCGTGA CTTACGTCTC CCCGACCTTG GGCGGGTTCT CGATTTCCGC GGCCTTCACG ATGAACGTCA ATGGCGAGGA GTCGCCGGAC AACCGTGGAG AGGGGGACGT CGGGGACATC CATGCGTGGT CCGTCGTGCC GCAATACGTG AACGGCCCCC TGTTTGCGGG CATCCACCTC CAGGAGATGC GTGCCAAGTC CACCGGCCTG TACGACGGCG AGACGGTGCG CGTGTATGAC GTCGCCGGCA CCTACGATTT CGGTGTCGCC AAGCTCGCCG CCTCGTACGG GCTGCGTCGC GCCAGCGCTG CCGATTTCAG CCCCGATTCG GCGGCCGTGA ACGGAAAGGA CTCCCGCCAG TGGTTCGTCG GCGTGACCGT GCCGGTCGGC GCGGCCGGCA CCGTGCGCGC CTCCTACGTG GCGCGCGAGA CCGAAGTCGT TTCCGGCGGG CCCGACGCGA AAGTCAGCCA GTGGGCGCTC GGCTACGAGC ATGCACTGTC GAAACGCACT GCCCTCTACG CGGTGTATGC GGACATCGAC AACAACGAAG CCGCGAAGGA CAGCGGCCTG TATGCCTCGA TCGGCGATGC GATGGCTGGC GGCGTCGCGG GCGGGGACGG CTACCAGAGG GGCGTGAACC TGGGCCTGCG GCATAGCTTC TGA
|
Protein sequence | MQKNLIALAV AGLAALPAFA QSNVTIYGLV DMGYKWSGDN MDDRVSSRSA LDSGMSAGSR LGFKGTEDLG NGMKAGFVLE QGLNLDTGTL GQGGRAFGRQ SFVSLGGGFG TVALGRQYPA GYLLTATVDP FGSGTAGQYN SVYLTEYRWD NAVTYVSPTL GGFSISAAFT MNVNGEESPD NRGEGDVGDI HAWSVVPQYV NGPLFAGIHL QEMRAKSTGL YDGETVRVYD VAGTYDFGVA KLAASYGLRR ASAADFSPDS AAVNGKDSRQ WFVGVTVPVG AAGTVRASYV ARETEVVSGG PDAKVSQWAL GYEHALSKRT ALYAVYADID NNEAAKDSGL YASIGDAMAG GVAGGDGYQR GVNLGLRHSF
|
| |