| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1374 |
|---|
| Symbol | |
|---|
| ID | 5298312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1376782 |
|---|
| End bp | 1377714 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 640769647 |
|---|
| Product | protein of unknown function UPF0052 and CofD |
|---|
| Protein accession | YP_001306606 |
|---|
| Protein GI | 150021252 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0391] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01826] conserved hypothetical protein, cofD-related |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.592756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTG TTTTGGTAGG TGGTGGAACA GGAATATCAA CATTATTAAA AGGATTGAAA
TACTTTAAAG ATATAGATTT AAAAGCTATT GTTACTGTAA CTGATGAAGG TGGAAGTTCT
GGTGTTTTGA GAAAAGAATA TAATATAATC CCACCTGGTG ATATAAGGAA TAATTTAGTT
GCACTTGCTA AAGATGAAGA AGTAATAGGT AAGTTGTTTT CATACAGATT TTCCGAGGGT
TTTTTAGCAG GACATACAGT AGGAAATATC ATGTTAACAG CTCTAACGAA AATTTTTGGA
AGTTTTACAA AGGCGGTTGA GTATCTTTCT GAAGTTTTGG CAATTAATGG TAAAGTAATA
CCTGTAACTG AGGATTTGGT TAGACTAATT GCAGTGTATG ATGATGGAAC GATTGCGTAT
GGTGAAAGTG AAATAATGAA TATAAAAATG AAAAGAATAA TAAGAATTTT TTTAGATAAA
AAATCTAAAA TTAATGTTGA TGCATCTGAA GCAATTAAAA AAGCAGATTT TATAATATTT
GGGCCAGGTA GCTTGTTTAC AAGTATCATT CCAAATTTGC TTGTTGATGG ATTTAATGAG
AGTTTGGAAG GATCAAAAGC TAAATTAATA TATGTATCAA ATTTGATGAC TCAACCTTCT
GAGTCATATA ATTTTACTTT AAAGGAACAT GTTGATGAAG TTGAAAAATA TATTGGAAGA
AGTGTAGATT ATATAATAGC TTCAAATTCT AAGATACCAG AAGATATTTT GAAAAAATAT
CAGGAAAAAG GCTCCATACC GGTGAAAATT GATTTGATTG ATGAAAGAGT TATAGTGGAA
GATCTGGCAG AAGTAAAAAC GATTGATGGA TTTAATAGAA TTAGGCATAA CTCTTTAAAA
CTTGCGAGTG TAATTATAGG TTTAATTAGG TGA
|
|---|
| Protein sequence | MNFVLVGGGT GISTLLKGLK YFKDIDLKAI VTVTDEGGSS GVLRKEYNII PPGDIRNNLV
ALAKDEEVIG KLFSYRFSEG FLAGHTVGNI MLTALTKIFG SFTKAVEYLS EVLAINGKVI
PVTEDLVRLI AVYDDGTIAY GESEIMNIKM KRIIRIFLDK KSKINVDASE AIKKADFIIF
GPGSLFTSII PNLLVDGFNE SLEGSKAKLI YVSNLMTQPS ESYNFTLKEH VDEVEKYIGR
SVDYIIASNS KIPEDILKKY QEKGSIPVKI DLIDERVIVE DLAEVKTIDG FNRIRHNSLK
LASVIIGLIR
|
|---|
| |