Gene Tmel_0953 details

Gene Information

• Locus tag: Tmel_0953
• Symbol: rplC
• ID: 5296943
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 988633
• End bp: 989250
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 640769237
• Product: 50S ribosomal protein L3
• Protein accession: YP_001306199
• Protein GI: 150020845
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.0000000660439
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATGA TAATTGGAAG AAAATTAGGG ATGACGCGAG TTTTTGTAGG AGATAAGGTT 
GTTCCTGTTA CAGTTATAAA AGCTGGGCCA TGCTTTGTAG TACAAAAAAA GACAATTGAA 
ACAGATGGAT ATAATGCAGT ACAATTAGGT TTTGAAGAGG CAAAAAAGGT AAATAAGCCT 
ATGGAAGGTG TTTTTAAAAA GGCAGGAGTA AACCCTTTAA AGGTTTTAAA AGAATTTAGA 
GTAGAAGATC CAGACAAATT TGAAGTAGGC CAAGAAATAA AGGTTGATAT TTTTTCAGAA 
GGTGATAAGA TAGATATTAC AGGATGGTCC AAAGGTAGAG GATTTGCCGG TGCAATGAAA 
AGATGGGGAT TTAGAGGCGG GCCAAAGTCT CATGGTGCGA AATTCCATAG AGAATTAGGT 
TCGGTTGGTC AACATTCAGA ACCTGCAAGA ATTTTCAAAG GTAAAAAGAT GCCGGGACAA 
TACGGTAACG AACGTGTAAC AATTTTAAAC TCAGAAATTG TTAAAATAGA TGTTGAAAAT 
AATTTAATAG CGGTTAAAGG TGGCGTCCCA GGAGCGAGAG GCGGCCTTGT CCTCATTAAA 
AGCGCAAAAA GGGGATAA 

 

Protein sequence

MKMIIGRKLG MTRVFVGDKV VPVTVIKAGP CFVVQKKTIE TDGYNAVQLG FEEAKKVNKP 
MEGVFKKAGV NPLKVLKEFR VEDPDKFEVG QEIKVDIFSE GDKIDITGWS KGRGFAGAMK 
RWGFRGGPKS HGAKFHRELG SVGQHSEPAR IFKGKKMPGQ YGNERVTILN SEIVKIDVEN 
NLIAVKGGVP GARGGLVLIK SAKRG