Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_0803 |
Symbol | |
ID | 5298102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 840893 |
End bp | 844381 |
Gene Length | 3489 bp |
Protein Length | 1162 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 640769080 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001306049 |
Protein GI | 150020695 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.64096 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAG TTGTTTTTAT TTTACTCATT TTTTCAATTT TTAGTTTTTC TTCTGTATTT GTTGAAAACG GTGAAGTTAT TTTCACATTT AAAAAAGCAT TGGATGCAAA GGTTGTTTAT CTTGCAGGAA CTTTTAACAA CTGGTCACCA AACTCTTTAG CAATGGAAAA AGAGGGAAAT GTATGGAAAA TTTCTTTGAA ACTAGAGCCA GGTACATATC AGTACAAATA TGTAATAGAA GGGACAAATT GGAAAGAAGA TCCAGAAGCT CCTGGTTATG TTGACGATGG ATTTGGTGGA AAAAATGGTA TTTTTACTTT GGCAAAAAAA GATGGAGAGT TAATAATACT GAAGAGTGAA ACGAAAAAAA GTGAAAGTAG TTATGAAAAA AATGAAAAAT TTGATAAGGG TAAAATGTTT ATTGATGAAG AAGGTTATGT GGTGATAAGG TTTGAGTATA AAGGAGCAGA TTACGTTACA ATTGCAGGTA ATTTTAACAA TTGGAATGCA GAAGACACAG AATGTTATGA AATTGATGAT GGCATATGGG AAGCGGTTTT AGAACTTGAG GAAGGGGATT ATCAATATAA ATTTGTCGTT AATGGAAAAG ATTGGGTAAC CGATCCTAAT GCTCTGGCAT TTGTAGATGA TGGATTTGGC GGAAAAAACG GCTTTTTCCA AGTATTCAAA GTTAATGGAA AACTAACAAT AGGTTTAAAA GAAGAAAGCA CTAAAGCCAA ACCTTTGAAT GTAGCTATAA TTTGGCATCA TCATCAACCA TTGTACAAAA TTCCTGGAGA AGAACAATTT ATGATGCCAT GGGTTAGAAC TCATGGAGTA AATGATTATC CTTACATGGC AGATTTAGTA AAATATCTAA AAACAGGAAA AGTCACTTTT AATCTTGTTC CAAGTTTGCT TTTACAAATA GAAGATTATC TGAAAGGGCA ATTAGATGAA TACCAAAGAT TATCTTTAAA CGAAAATCTC ACAAAACAAG AAAAACAATT TCTTATAAAT CACTTTTTTG ATATTAATCC ACAATTTGTC AACGCACATG AAAGGTATAA AGAGTTGATG GAAAAGAAGG TTTCAGGAGA AGAATTCACA GATCAAGATT TACTAGACTT AAAGGTCTGT TGGAATCTCT ATTGGATAAA TATTGAATAT ATAAATCAAG ATGAAAGATT AAAATCTTTG ACCAGCAAAA AACACTACAC AAAAGAAGAT TTAATATACG TACTTGATTA TCATAAAAAG CTTTTAAGTG AAATTGTTGA AAAATACAAA ACGCTTTGGG ATAATGACAA AGTAGAACTA ATTACCACTC CATTTTACCA CCCCATATTA CCAATATTAG TTGACATGGG TTGGAAAGAT GATGCAGTTA TACAAATAAA GGAAGGTTTA TCCTATTTTG AAAAAATCTT TGGAAAAAGA CCTGTTGGAA TGTGGCCTTC TGAACAAGCT GTATCTCAAG AAGTACTGGA AATCATAGCG GAAAATAACA TAAAGTGGAT TGTAACAGAT AAACAAATTT TACAAAAATC TGGAATTGAT ATTGGAAAAG TGGAAAATTT CTTAAGACCT TACAAGGTAA AGACTTCCAA AGGAGATGTA GTCGTATTTT TCAGAGATAC AGACCTATCA GATAGAATTG GCTTTAAATA TTCTCAAATG CATGCAGAAA GTGCCGTAAA AGATTTTATA GAAACACTAC ATCAGTACCA AAAGTTAAAC AAAGACGGCA ACCTTGTAAT TACCATAGCA TTAGATGGCG AAAATGCATG GGAACATTAT CCAAATAACG GAAATGATTT TAGAAAACTA CTTTACAAAA AACTATCAGA AGATCCTTTG ATAAACCTTG TAACCCTCTC AGAATACATT GAAAAATTTG GTGTAAAAAA TACTCTTGAT AAAATTGCAA AAGGCTCTTG GGTATCTGGT TCATTGGATA CTTGGATAGG TGAAACCGAA GAAAATCAAG CATGGAAAAG GTTGAAAGAT GCAAGGAAAG TTCTTCTGGA AAAAGGCCTG GATGACATTT CCAAACATCT TTTAATGGCA GCGGAGGGTA GTGATTGGTT CTGGTGGTAC GGAACAGACC AGGATGCAGG TAACAATGAA TACCTTTTCG ATATGCAATT TAAAAAATTA TTGATTGAAA TGTACAAAAA AGCAGGGAAA GTTCCACCAA GTTATCTTTA TATAGTAAAC AAAAGACCTG TAAATCCAGA CAAAGGCGTA ATTAAGAAGG TTGAATACAA AATTGATGGA ATAAAAGAAA ATGACATAGC TGTTTTTGAA GATACTTTGG ATGGTAATTT ACTCAACAAC GTTTTTGTCG CACGTGGAGA TTCTGGTATC TATGTAGGTG TAGAACTTAA TAACAGTGCA AAAAGTCTAT TGGGAAAAGA TATAAAAGTA GAAGTTTACG TTGAAAGCCC TACGGCAAAA ACATTTAACG CCAAAACCTA TTACTCAAAC GAAAACATTA CTTTTTTGGG CTTTCCTCTA TCTCATAGAT TTGTGGTAAA CCTAAAAACA TGGAACAAAA GACCAAAAGT AAGTTTCTAT AAGGCAAATG GTAGTGATAA ATGGATACTT ACAACTGGAA ATATTTCAGG AGTTATTGAT GATATCGTTG AAATTGAAAT ACCATACGAT CTGATAAATG TAAAATCTGG TCAAGATTTT AATCTTGCAG TAGTTGTGTC AGAAAACAGG CAAGATAAAG ATTTTGGACC TAATAACGGT CCAATAAAGG TTATTATTCC GGCGGCGATT TCCGGAAATG TAATTAAAAT ATTTGAAGAT CCATTGGGAG ATGAATATGG ACCTGGAAGT TATGTCTATC CAAAAGATCA AGCATTCAAA CCATTTAAAG GGTTATTTGA TATGATAAAA GTAGTTGTTC TAGAAAATGA AAAATCGTTT ATATTCCAAA TAAAGTTTGC TGAAATGACA AACCCCTGGG GTGCACCAAA AGGTTTTTCT CACCAACTTA TAAATATATA CCTCGATACC AAGGAAGGAG GAAGAACAGA TACCTATAAA GAAGGGGCAA GGGTTGCATT TGACCCACAG CATTCTTGGG ATTATTTTAT AAAGGTTGCA GGATGGCCAT CTTATGGACA ATTTTTCGCA ACAAGTGATG GTAATGAAAT ATCAGATGCG GTAAGAGTTG AAGCAAATCC AGGCAAAAAA GTTATTAATG TTATCCTGTT GAAGAAATAC ATTAATATTG AAACAGGCAT ATACGCTTAT ATCTTAGTAG GAAGCCAAGA TGGATATGGC CCAGATAACT TTAGACCTGT TACCCCAGAA CCTTCTCAAT GGACTTTGGG AGGATATCCA AAAGATTCCA ATGATATGGC TCCTTATGTT TTGGATATTT TAGTGGAAAG TGGTAAAGAT CAAAGAGAAA TTCTTTCTTC GTTTACAAAA ACAAATTATG CAGTATTAAA ACCTGTTAAG ATTAAATAA
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Protein sequence | MKKVVFILLI FSIFSFSSVF VENGEVIFTF KKALDAKVVY LAGTFNNWSP NSLAMEKEGN VWKISLKLEP GTYQYKYVIE GTNWKEDPEA PGYVDDGFGG KNGIFTLAKK DGELIILKSE TKKSESSYEK NEKFDKGKMF IDEEGYVVIR FEYKGADYVT IAGNFNNWNA EDTECYEIDD GIWEAVLELE EGDYQYKFVV NGKDWVTDPN ALAFVDDGFG GKNGFFQVFK VNGKLTIGLK EESTKAKPLN VAIIWHHHQP LYKIPGEEQF MMPWVRTHGV NDYPYMADLV KYLKTGKVTF NLVPSLLLQI EDYLKGQLDE YQRLSLNENL TKQEKQFLIN HFFDINPQFV NAHERYKELM EKKVSGEEFT DQDLLDLKVC WNLYWINIEY INQDERLKSL TSKKHYTKED LIYVLDYHKK LLSEIVEKYK TLWDNDKVEL ITTPFYHPIL PILVDMGWKD DAVIQIKEGL SYFEKIFGKR PVGMWPSEQA VSQEVLEIIA ENNIKWIVTD KQILQKSGID IGKVENFLRP YKVKTSKGDV VVFFRDTDLS DRIGFKYSQM HAESAVKDFI ETLHQYQKLN KDGNLVITIA LDGENAWEHY PNNGNDFRKL LYKKLSEDPL INLVTLSEYI EKFGVKNTLD KIAKGSWVSG SLDTWIGETE ENQAWKRLKD ARKVLLEKGL DDISKHLLMA AEGSDWFWWY GTDQDAGNNE YLFDMQFKKL LIEMYKKAGK VPPSYLYIVN KRPVNPDKGV IKKVEYKIDG IKENDIAVFE DTLDGNLLNN VFVARGDSGI YVGVELNNSA KSLLGKDIKV EVYVESPTAK TFNAKTYYSN ENITFLGFPL SHRFVVNLKT WNKRPKVSFY KANGSDKWIL TTGNISGVID DIVEIEIPYD LINVKSGQDF NLAVVVSENR QDKDFGPNNG PIKVIIPAAI SGNVIKIFED PLGDEYGPGS YVYPKDQAFK PFKGLFDMIK VVVLENEKSF IFQIKFAEMT NPWGAPKGFS HQLINIYLDT KEGGRTDTYK EGARVAFDPQ HSWDYFIKVA GWPSYGQFFA TSDGNEISDA VRVEANPGKK VINVILLKKY INIETGIYAY ILVGSQDGYG PDNFRPVTPE PSQWTLGGYP KDSNDMAPYV LDILVESGKD QREILSSFTK TNYAVLKPVK IK
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