| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0787 |
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| Symbol | |
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| ID | 5298053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 829042 |
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| End bp | 830112 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 640769065 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001306034 |
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| Protein GI | 150020680 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCTAA AAGAAAACTT AAACAAATAT AACATGATAG ACTTTCTTGA AAATATAAAT
ATTCCATCTT ATATTGTCGA CACTAAGAGA ATTATTAGAT TCTGGAATAA AGCAGCAGAA
AAGCTAATTG GCTATTCACA AGAAGAAGTT GTTGGTTATT CCTGTTCAAA TAACGTATTA
AAACATATTG ATAGAAATGG AATAATTGTA TGTAATACCG ACCTCTGTCC CCTTGTAAGG
TCAATAAGAA GTGGAAAGTT CTTTAGAGTG CCATTTGCTG TATATTCTCT AACAAAAAGA
GGAGAAAGAA TCCCTGTTAA TGTTTATGCC TTTCCTTTAA AAAATAAATT TGGAGAAATC
ATTGGAGCAG TTGAAATGTT TGAGGATGCA ACTAATATAG ATGCTGAGCT TAAAAAAGCT
TTTGATATTC AAAATTTTCT ACTCCCCAAA GAAAATGAGT TTGTAAAATT TATTTACTAT
CCATCAAATG TCATTGGTGG AGATTTCATC TATTACAATC ATCCATGGAT TATGTTAATT
GATGTAAGTG GCCACGGATT AGGTGCAGCC TTACTTTCAA CTTCAATTAA AATAATGATA
GATGCCATAC TTGAAAACAA TGTAAATATA GAAATAGATG ATTTTCCATT AATTCTAGAG
GAAAAATCGA AAAATATATG TAATGAAAAT TACTTTACCA CGATTATTGG CAAAATAGAA
GATAATAAAA TCAAGATAAT AAGTTGTGGA CACCCTGATC CAATAGTATT TAATGGAAAC
AAGGCAAATA TAGTTAAAGT TTCACGTACA TTTCCCATAG GTATGGGATT AATAGACTCA
AAAATAACTC CGACAATTCT TGATCTAAGT AAAAACACGG TATTATTTTA TTCGGATGGT
ATAACTGAAA TGAAAATCTC ACAAGAGAAA ATGCTCACAG CAAAAGGACT TGCAAAACTT
TTCGAAAAAA CTCAAAATTT AAGAGAAATT TATAAAAGTG CCATGGAACT TAATAAAGAT
GATTACCAAA AAGATGATAT AAGTCTTGTA ATAATTAAAA ACCTCTCTTA A
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| Protein sequence | MNLKENLNKY NMIDFLENIN IPSYIVDTKR IIRFWNKAAE KLIGYSQEEV VGYSCSNNVL
KHIDRNGIIV CNTDLCPLVR SIRSGKFFRV PFAVYSLTKR GERIPVNVYA FPLKNKFGEI
IGAVEMFEDA TNIDAELKKA FDIQNFLLPK ENEFVKFIYY PSNVIGGDFI YYNHPWIMLI
DVSGHGLGAA LLSTSIKIMI DAILENNVNI EIDDFPLILE EKSKNICNEN YFTTIIGKIE
DNKIKIISCG HPDPIVFNGN KANIVKVSRT FPIGMGLIDS KITPTILDLS KNTVLFYSDG
ITEMKISQEK MLTAKGLAKL FEKTQNLREI YKSAMELNKD DYQKDDISLV IIKNLS
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