| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1899 |
|---|
| Symbol | |
|---|
| ID | 7315229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 2025467 |
|---|
| End bp | 2026192 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643616790 |
|---|
| Product | conjugal transfer protein TrbJ |
|---|
| Protein accession | YP_002513967 |
|---|
| Protein GI | 220935068 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.668974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGC GCCTTGTCGC CGCGGCCATC GCGGCCATGC TTTGCACGGC CACTGCCCAT
GCGCAATGGG TCGTGATCGA CCCCACCAAC CTCGTGCAGA ACACGCTGAC TGCGATCCGC
ACGCTGGAGC AAATCAACAA CCAGATCCAA CAGCTTCAGA ACGAAGCGCA GATGCTGATG
AACCAGGCGC GCAACCTCGC CAGCCTGCCG TCCAGCGTGG TCGGCCAGTT GCGCGCCAAC
CTGGCAACGA CCGAGCGGTT GATCGCCCAG GCCCGAGGCT TGGCCTACGA CGTGACGAAT
CTGGATCGGG AGTTTGCCCG CCTGTACCCG GAGCAGTACG CCGCCACCGT CAGCGGCGAC
CAGATGTACC GCGACGCCCA GGAGCGATGG AAGAACACGC TCAACGGCTT GCAGACCACC
ATGCAGATGC AGGCGCAGGT GTCGCAGAAC CTGGGCGAAG ACGAAAGCGT GCTGGCCGAT
CTGGTCGGCA AGAGCCAGTC GGCGCAAGGC GCGTTGCAGG CGATGCAGGC CATGAACCAG
TTGCTCGCCT TGCAGGCCAA GCAGTCGATC CAGTCGCAGC GGCTCCAGAT CACGCAAGAC
CGGGCCGCCT CGTTGGAACT GGCGCGGCAG GCGGCGGCCA CCGAGCGCGC CCGCGAAGTG
CGGCGGCGCT TCCTCGGGGA AGGCACGCCG TACACGCCGC AGTCCGTCAA CTTCTACCGC
GACTGA
|
|---|
| Protein sequence | MKKRLVAAAI AAMLCTATAH AQWVVIDPTN LVQNTLTAIR TLEQINNQIQ QLQNEAQMLM
NQARNLASLP SSVVGQLRAN LATTERLIAQ ARGLAYDVTN LDREFARLYP EQYAATVSGD
QMYRDAQERW KNTLNGLQTT MQMQAQVSQN LGEDESVLAD LVGKSQSAQG ALQAMQAMNQ
LLALQAKQSI QSQRLQITQD RAASLELARQ AAATERAREV RRRFLGEGTP YTPQSVNFYR
D
|
|---|
| |