| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1898 |
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| Symbol | |
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| ID | 7315228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 2023017 |
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| End bp | 2025470 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643616789 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_002513966 |
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| Protein GI | 220935067 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAACC TTGCCGAATA CCGCCAACGG CCCGCGCTGC TCGCCGACTG GCTGCCCTGG
GCCGGACTGG TCGCGCCGGG TGTCGTCTTG AACAAGGACG GCAGTTTCCA GCGCACCGCC
CGGTTTCGCG GGCCTGACCT CGATAGCGCC ACGCAAGGCG AGCTGATCGC CACGTCGGCA
CGCCTGAACA ACGCGCTGCG CCGGCTGGGT TCTGGCTGGG CGCTGTTCAT CGAGGCCGAG
CGCCGCACCG CTGCCGACTA CCCGCACTCG GAGTTTCCCG AGCCACTTTC GTGGCTGGTG
GACGAAGAAC GCCGCTCGGC CTTCGAGGAT ACCGGCCATC ACTTCGAGAG CGGCTATCAC
CTGACGCTGG TGTACCTGCC GCCCGAGGAA TCGCGCGCCC GTGCCGCCAA GATGCTCTAC
GAGAACACGC CGACGAATGG CGTGGACTGG CGCGAGCGGC TGCAAGCCTT CGTCGCGGAA
ACGGATCGGG TCTTTGACCT GCTCGATGGC GTCATGCCGG AAATCGCCTG GCTCGATGAC
AGCCAGACGC TGACCTATCT GCACTCGACC ATCTCGACGC GGCGCTATCG CATGGGCGTT
CCCGAGGTGC CGTTCCACAT CGACGCGCTG CTGACCGACT CGCCGCTGGT CGGTGGCCTG
GCCCCCATGC TGGGCGACAG GCACCTGCGC GTGGTGTCGG TGCGCGGATT CCCGACCTCG
ACCTGGCCGG GGATTCTGGA CGACCTCAAC CGCCTGGGAT TTGGGTATCG CTGGAGTACG
CGCTTTCTGT GCCTCGACAA ATCCGAGGCG GAACGGGAAT TGGGGCGTCT GCGCCGCCAG
TGGTTCGCCA AGCGCAAGAA CGTCATCGCG CTGCTGCGCG AAACGATCTT CCAGCAGGAA
AGCCCGCTGG TCGATACCGA CGCGAACAAC AAGGCGGCGG ACGCGGATGC GGCCTTGCAG
GAGCTGGGCA GCGATCAGGT CGCCTTCGGC TACCTGACGG CGACCGTCAC CGTCATGGAC
GAGGACGCCG GCGCAGCCGA CGAGAAGCTG CGCATGGTGG AGCGCGTCAT TCAGGGGCGC
GGCTTCGTCA CCATCCCCGA AACGCTCAAT GCCGTGGATG CGTGGCTGTC CTCGCTTCCC
GGCAACGCCT ACGCCAACGT GCGTCAGCCC ATCGTCTCGA CGCTGAACCT GGCGCACATG
ATGCCGGTGT CGGCGGTGTG GGCCGGGCCG GAGAAGAACG ACCACCTGGA CGGCCCGCCG
CTGATCGTCA CCCGCACCGA TGGCGCGACG CCGTTCCGGC TGGTGACGCA CATCGGCGAC
GTGGGCCACA CGCTGGTCGC CGGCCCGACC GGCATGGGCA AGTCGGTCTT GCTCGCCACG
CTGGCGTTGC AGTTTCGCCG CTATCGCGGC TCGCGCATCT TCGCCTTCGA CATGGGGCGT
TCCATGCGCG CCACGATCCT CGGGCTGGGC GGCGAGCACT ACGACCTGGG CACGGATGGA
GAAATCGCCT TCCAGCCGCT CGCGCGCATC GACCGCGAGG GCTACCGCAC CTGGGCAGCG
GAATGGATCG AAGGCCGCTT GCTGCACGAA GGCGTGGCAG TCGGCCCGGA CGAGAAGGCG
GCCATCTGGT CGGCACTCGG CAGCCTTGCC GGTGCGCCGG TGGAGCAGCG CACGATGACC
GGGCTGTCCG TCCTCTTGCA GTCCAACGCG CTGCGCCAGG CGCTCGCGCC GTATGTGCTG
GGCGGCGCGC ACGGCAAGCT GCTGGACGCC GACCACGACC GGCTGGGCAT GGCCGACGTG
CAGTGCTTCG AGATGGAAGA GCTGATGCAC AGCAAGGCCG CCGTCATGGC CGTGCTGCAT
TACCTCTTTG CGCGCTTCGA CGAACGCTTT GACGGTGCGC CCACGCTGCT GATCCTCGAT
GAAGCGTGGC TGTTCCTCGA TGACCCGGTG TTTGCCGCGC GCATCCGCCA GTGGCTCAAG
ACGCTGCGCA AGAAGAACGT CAGCGTCATC TTCGCAACGC AGTCGCTGGC CGACATCAAG
GATTCGAGCA TCGCGCCCGC GATCATCGAG AGCTGCGCGA GCCGCATTTT CCTCGCCAAC
CCGCAGGCGA CCGAGCCGCA GATTCGCACG ATATACGAGG GCTTCGGCCT CAACAGGCGT
CAGATCGAAA TCGTCGCCAC CGCGCAGCCC AAGCGCGATT ACTACTACCA ATCCCGCCTC
GGCAACCGCC TGTTCGACCT CGACCTGGGG CCGGCGGCGT TGGCGTTTGC GGGCGCTTCC
ACGCCGCAAG ACCAGCGCGA CATAGACCGC GTGCTGCTGG ACGCCGGCAC GCCCGGCTTC
GCGGGCGCCT GGCTGCGCCA TCGCGGCCTC GATTGGGCGG CTGACCTGCT GCCCTCGTTC
CCCGGCCTCG CGCCGGGTTC CCTCGCTGAC CACCCACAGG AGAACCTGCC ATGA
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLVAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
RLNNALRRLG SGWALFIEAE RRTAADYPHS EFPEPLSWLV DEERRSAFED TGHHFESGYH
LTLVYLPPEE SRARAAKMLY ENTPTNGVDW RERLQAFVAE TDRVFDLLDG VMPEIAWLDD
SQTLTYLHST ISTRRYRMGV PEVPFHIDAL LTDSPLVGGL APMLGDRHLR VVSVRGFPTS
TWPGILDDLN RLGFGYRWST RFLCLDKSEA ERELGRLRRQ WFAKRKNVIA LLRETIFQQE
SPLVDTDANN KAADADAALQ ELGSDQVAFG YLTATVTVMD EDAGAADEKL RMVERVIQGR
GFVTIPETLN AVDAWLSSLP GNAYANVRQP IVSTLNLAHM MPVSAVWAGP EKNDHLDGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAT LALQFRRYRG SRIFAFDMGR
SMRATILGLG GEHYDLGTDG EIAFQPLARI DREGYRTWAA EWIEGRLLHE GVAVGPDEKA
AIWSALGSLA GAPVEQRTMT GLSVLLQSNA LRQALAPYVL GGAHGKLLDA DHDRLGMADV
QCFEMEELMH SKAAVMAVLH YLFARFDERF DGAPTLLILD EAWLFLDDPV FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCASRIFLAN PQATEPQIRT IYEGFGLNRR
QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PAALAFAGAS TPQDQRDIDR VLLDAGTPGF
AGAWLRHRGL DWAADLLPSF PGLAPGSLAD HPQENLP
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