| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1584 |
|---|
| Symbol | |
|---|
| ID | 7316210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1700411 |
|---|
| End bp | 1703515 |
|---|
| Gene Length | 3105 bp |
|---|
| Protein Length | 1034 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643616477 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_002513655 |
|---|
| Protein GI | 220934756 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGACA GATTGATTGA CTGGTCTCTG GCCAACCGCA TGCTGGTGGT CCTGCTCGCG
ATAGCGGCCC TGGGCGCAGG CGTCTGGATG GCCCGCGAGG CGCCGGTGGA CGTGTTCCCC
GACCTCACCG CACCCACCGT CACGGTGCTC ACCGAGGCCC ACGGCCTGGC CGCCGAGGAA
GTGGAAAGCC AGGTCACCTT TGCCATCGAA ACAGCGGTCA ACGGGGCCGA TGGGGTCCGG
CGGGTGCGCT CCCAGTCGGT ACCGGGATTC TCCATCGTCT GGGTGGAGTT CGACTGGGGG
CGCGACATCT ATCAGGCGCG GCAGGTGGTC GCCGAGCGCC TGGGCCAGGT CACCGGACTG
CCCGACGGGG TGGAGGCCCC GCAGATGGGG CCGGTCAGTT CCATCATGGG CGAGATCCTG
TACCTGGGAC TGCGTGCCCG CGCCCCCGCC GACCTGATGC AGGCCCGCGA GGCGGCCGAC
TGGCTGATCG CGCCGCAGTT GCTGGCCGTG CCCGGCGTCG CCCAGGTGGT GAGCCTGGGC
GGACAGGTGC GTCAGTACCA GGTGCTGGTG GACCCGGAGC GCATGCGCGC CAACGGCGTG
GACCTGGCCA TGATCAACCG GGCCGTGGCC GACGCCAACC GCAATGCCAG CGGTGGCCTG
GTGGAACGAG GCGGGCAGGA TTACCTGATC CGTTTTCTCG GTCGCACCAC GGACCTGAGC
GACATACGTG AGGCCGTTGT GGCCGTGCGC GGTGACGCCA TCGTGCGCAT ACGCCACGTG
GCCCAGGTCA GCATGGGAGC GTCCATCCCG GTGGGCGACG GCGGGGTCAA TGGCGAGCCG
GGGGTGGTGC TTGCCGTGTC CAAACAACCG GGTGCCGACA CCCTGTCGTT GACCCGGGAC
ATCGGCGAAC GTCTCGACGC CCTCGCCAAC CAGCTCCCAG AGGGTCTGGA GCTATTCCCC
GACCTGTTCC GCCAGGCGGA CTTCATCGAG CTGGCGGTAG ACAACGTGGG CAAGGCGCTG
CGTGACGGCG CCCTGTTCGT GGTGGTGGTC CTGTACCTGT TCCTGCTCAA TTTCCGTACT
ACCCTGATCT CCCTGCTGGC CATCCCCCTG TCCCTGGTGG CGGCCCTGCT GGCGCTTACG
GCCCTGGGTA TCAGCATCAA CACCATGACC CTGGGCGGCA TGACCATCGC CATCGGCGCC
CTGGTGGACG ATGCCATCAT CTTCGTGGAG AGCATCTACC GGCGTCTCAA GGAAAACAGT
GGGCGTGAAC ATTCCGAGCC CGCCGGGCGC GTCATCTATC ACGCCTGCGT GGAAGTGCGC
CGGCCAGTGG TCTTCTCCAC GGTCATCATC ATGCTGGTGT TCCTGCCGCT GTTCTTCCTG
GGTGGCGTGG AAGGCCGCCT GCTGCAACCC CTGGGTATCG CCTACCTGGT GGCCATCGCC
GCCTCCCTGC TGGTGGCCCT GACCCTGACA CCGGTCCTGG CCAGCTATCT GCTCGCCGGT
GCCCGGGATC TGCGCACGCC AACCGAACCG CTGCCGGTCC GCGCCCTGCG CAGTGCCTAC
CGTCCGATCC TGGCATTCAC GATGCGACAT GCCCCCTGGG TCCTGGGTGC CTCGCTGCTG
CTGGCGGTGC TGACCGTGGT GAGTGTCACC CAGCTGGGCC GATCCTTCCT GCCCGAGTTC
AACGAGGGCA GTCTCACCAT CGAGATGGTC ACACCCCCGG GTACGGCGCT GGCGGAATCG
GCGCGCCTGG CCCGTGCGGT GGAACAGGCG GTGCTGGAGC GCCCCGAGGT GCTCTCCGTG
GCACGGCTCA CGGGCCGTGC GGAACAGGCC GAACACAGCC AGCCGCCACA CATGAGCGAA
CTGGACCTGC GCCTCGGTCA CCTGCCCGAG GGCAAGGCCG CGTTCCTGGA GGCACTGCGC
AACCTGCTGG CCGGGTTTCC GGGGGCCAAT TTCAACATCG GCCAGCCCAT CTCCCATCGC
ATCGATCACA TGCTCTCCGG CGTGCGCGCC AACATCGCCG TCAAGCTGTT CGGGCCGTCC
CTGGCGGAAC TGCGCCGTCT GGGCAGCGAG ATCGAGACAG CGCTGGAGGA CATCCCGGGA
CTGGTGGACG TGTCCGCCGA GGCCCAGGCC GAGGTGCCGC AACTGCGCCT GCGCGTGGAT
CGCGAGGTGA TCGGGCGCTA TGGACTCGGG GCAGGGGAGG TGGCCGAACT GGTGGAGGGT
GCCTGGCGGG GCAGCGTGGT CTCACAGGTG TTCGAGGGCA ACCGGCGCTT CGACCTGGTG
GTCCGCTTGC CGGAGGAGAC ACGCCGTGAT TTCGAGACCC TGGGGCGCAT CCCGGTGCTC
ACCCCCACGG GGCACCACGT CACCCTCGCG GAACTGGTGG TCCCGGCCGT GGAACGGGGT
GCCGGCATGG TCCTGAGGGA GAACGGCGAA CGCCGCCTGG TGGTGAGCGC CAACGTGGCC
GGGCGCGACC TGCGCGGTGC CGTGGACCAG GTGCGTGAGA CACTGGCCGG GCGTCTCGAA
CTGCCGTCCG GCTATCGCCT GGAGTTCGGC GGGCAGTTCG AGGCTGAGGC CCAGGCCACC
CGCACGCTGC TCATGGTAGG CACCGCGGTG CTGCTGGCCA TGCTCGGCCT GCTGGCCGTG
TCGCTGCACT CCCTGCGTCT GGGACTGGTG GTCATGGCCA ACGTGCCGCT CGCCCTGATC
GGGGGTGTGG TGGCGGTCTG GCTGATGGGC GGTGTCATGA CCGTCGCGGC CCTGGTGGGC
TTCATCACCC TGTTCGGCAT CGCGGTACGC AACGGCCTGC TGCTCATGAG CCGCTATGGC
GACCTGGCCG CCGAGGGTCT GCCGCTGCGG GAAGTGATCG AGCGGGGCTC CCAGGAGCGC
CTGGTACCTA TCCTCATGAC CGCGCTCACC GCGGCCCTGG CACTCATCCC CCTGGCCATG
GGTCTGGGCG AGCCGGGCAC CGAGATCCAG GCACCCATGG CCTGGGTAAT CCTGGGCGGG
CTGCTCAGCG CCACCGCACT GAACATGGTG GTGGTGCCGG CGCTCTATCT GATGCTGACC
CCGAAGGCGG TACTGGATAA GGCGGTCGAG TCACAGCAAA GCTAG
|
|---|
| Protein sequence | MFDRLIDWSL ANRMLVVLLA IAALGAGVWM AREAPVDVFP DLTAPTVTVL TEAHGLAAEE
VESQVTFAIE TAVNGADGVR RVRSQSVPGF SIVWVEFDWG RDIYQARQVV AERLGQVTGL
PDGVEAPQMG PVSSIMGEIL YLGLRARAPA DLMQAREAAD WLIAPQLLAV PGVAQVVSLG
GQVRQYQVLV DPERMRANGV DLAMINRAVA DANRNASGGL VERGGQDYLI RFLGRTTDLS
DIREAVVAVR GDAIVRIRHV AQVSMGASIP VGDGGVNGEP GVVLAVSKQP GADTLSLTRD
IGERLDALAN QLPEGLELFP DLFRQADFIE LAVDNVGKAL RDGALFVVVV LYLFLLNFRT
TLISLLAIPL SLVAALLALT ALGISINTMT LGGMTIAIGA LVDDAIIFVE SIYRRLKENS
GREHSEPAGR VIYHACVEVR RPVVFSTVII MLVFLPLFFL GGVEGRLLQP LGIAYLVAIA
ASLLVALTLT PVLASYLLAG ARDLRTPTEP LPVRALRSAY RPILAFTMRH APWVLGASLL
LAVLTVVSVT QLGRSFLPEF NEGSLTIEMV TPPGTALAES ARLARAVEQA VLERPEVLSV
ARLTGRAEQA EHSQPPHMSE LDLRLGHLPE GKAAFLEALR NLLAGFPGAN FNIGQPISHR
IDHMLSGVRA NIAVKLFGPS LAELRRLGSE IETALEDIPG LVDVSAEAQA EVPQLRLRVD
REVIGRYGLG AGEVAELVEG AWRGSVVSQV FEGNRRFDLV VRLPEETRRD FETLGRIPVL
TPTGHHVTLA ELVVPAVERG AGMVLRENGE RRLVVSANVA GRDLRGAVDQ VRETLAGRLE
LPSGYRLEFG GQFEAEAQAT RTLLMVGTAV LLAMLGLLAV SLHSLRLGLV VMANVPLALI
GGVVAVWLMG GVMTVAALVG FITLFGIAVR NGLLLMSRYG DLAAEGLPLR EVIERGSQER
LVPILMTALT AALALIPLAM GLGEPGTEIQ APMAWVILGG LLSATALNMV VVPALYLMLT
PKAVLDKAVE SQQS
|
|---|
| |