Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0128 |
Symbol | |
ID | 3579014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 150490 |
End bp | 151686 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637683811 |
Product | pilus assembly protein CpaF |
Protein accession | YP_288189 |
Protein GI | 72160532 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAGCC AACTTTCCCT TTCCGGAACA GCGGTGGCGC GACTGCTCGA AGCAGTCCGC ACCCGGCTCA TGCGCGAGTC GGTGGAACCG ACCCCCGCCG CGGTAGCCGC CGCAGTCCGC GCGGAAGACA CCACCCTGGG CGACGCCGAA GTGCTGGCGC TCTCCCGGCT CCTCCGCGCC GACCTCACCG GTGCCGGACC GTTGGAACCC TTGCTCGCCG CCCCGGACAT CACCGACATC CTGGTCAACG GCCCGCACGA GATCTGGGTG GACGACGGCA CCGGGCTGCG CCGCGTCAAC GACATTGGCT TCCCCGACGA CGACGCGGTG CGCCGCCTAG CGCAACGGCT GGCAGCCCAG GCCGGCCGCC GCTTGGATGC GGCGGAACCG TGGGTGGACG CCCAGCTCCC CTCCGGGGCG CGGCTGCACG CGGTCCTGCC CCCGGTGTCC CCGGAAGGTC CCCGGCTGTC GCTGCGGCTG CCCCGCCACC GCGTGTTCTC CCTTCCGGAA CTGGTTTCCT TGGGCACGCT TCCCCCGGCA GGGGCGGCTC TGCTGCATTC CCTCGTGGCC TCCCGGTGCG CTTTCCTCAT CTCCGGCGGC ACCGGCACCG GGAAGACCAC GCTGCTGTCC ACCCTGCTGT CCCTTGCCGC TCCCACCGAG CGGCTGGTGC TGGTCGAAGA CGCTGCCGAG CTCCGCCCCG ACCACCCCCA CGTGGTCCGA TTGCAGTCGC GTCCACCCAA CATCGAAGGG CGCGGCGGAG TGGAACTCCA CGAACTCGTC CGCCAAGCAC TGCGGATGCG CCCCGACCGG CTCATCGTCG GCGAAGTGCG CGGCCCCGAA GTCGTCTCCT TGCTGCACGC CCTCAACACG GGCCAGGAAG GCAGCGCGGG GACCCTGCAC GCCAATACCG CAGCCGACGT CCCCGCCCGT ATCGAAGCAC TGGGGTGCGC GGCCGGGTTG AGCCGCGAAG CCGTGCACAG CCAGCTCGCC GCCACCCGCG CACTCGTCGT CCACCTGGTC CGCCCGCCCA GCGGGCCACG CCGCGTCGCC CAAGTGTGCG TTCTGCGCCG CGGGTGCGAC GGCCTGGTGG CAGCGGTACC GGCGGTCACC TTCACCGCGC ACGGCGACCT GGTGCACGAC ACCGCGTTCC CCGAATTGTG CGACCGGATC GCTGTACCGC CGGGGAGGGG GCAGTGA
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Protein sequence | MSSQLSLSGT AVARLLEAVR TRLMRESVEP TPAAVAAAVR AEDTTLGDAE VLALSRLLRA DLTGAGPLEP LLAAPDITDI LVNGPHEIWV DDGTGLRRVN DIGFPDDDAV RRLAQRLAAQ AGRRLDAAEP WVDAQLPSGA RLHAVLPPVS PEGPRLSLRL PRHRVFSLPE LVSLGTLPPA GAALLHSLVA SRCAFLISGG TGTGKTTLLS TLLSLAAPTE RLVLVEDAAE LRPDHPHVVR LQSRPPNIEG RGGVELHELV RQALRMRPDR LIVGEVRGPE VVSLLHALNT GQEGSAGTLH ANTAADVPAR IEALGCAAGL SREAVHSQLA ATRALVVHLV RPPSGPRRVA QVCVLRRGCD GLVAAVPAVT FTAHGDLVHD TAFPELCDRI AVPPGRGQ
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