| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2316 |
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| Symbol | ligA |
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| ID | 4245198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | - |
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| Start bp | 3587593 |
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| End bp | 3589917 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638107412 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_722012 |
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| Protein GI | 113475951 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.444372 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.080689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAAAAT TAACACTAGA AGTTGAGCAA TACACTCAAA ACTTAAGGGA AAAACTTCAA
GAAGCTGGTT ATTCTTACTA TGTTCTTGAT CAACCAATTA TGGAAGATGC TGTTTATGAT
CACCTACTTC GAGAGTTACA GGAATTAGAA AGTCAATATC CTCAATTAAT TGTTTCAGAT
AGTCCTACTC AAAGAGTGGG AGAAAAGCCA GCAACTAAAT TTGTATCAGT TAAACATAAT
ATTCCCCTTT ATAGTCTGGA AAATGCTTTT AATATTCAGG AATTAAAAAG TTGGCAAGAA
CGTTGGCAGC GTCAAACACT TCTTGAAAAT CAAAGGTTAA CTCTCCCCCT AAGGGGGGAA
GTCAAAATTA AAAACTCTAT TGATGAGTCA GATAATTTCT CTACAGTTAA TTCTTTAGCT
CCAGTAATTA CTGGTTCTAA TTTTGATGAA ATAGATTTAG CAAGTGTAGA TTATATTTGT
GAATTAAAAA TTGATGGTTC TGCTTTGGCT TTAACTTATG AAAATGGTTT ATTAGTACGA
GGTGCTACTC GCGGTGATGG AATTATGGGG GAAGATATTA CTCAAAATGT TAAGACAATT
AATAGTATTC CCTTAAAACT TAAAGTTGAT AATCCACCTT TATTAGTAGA AGTTAGGGGA
GAAGCTTTTT TATCAATAAA TGTATTTGAA AATATTAATG CTGAAAGAGA AAAAATTGGA
GAGATTATAT TTGCAAATCC ACGGAATGCA GCAGCAGGTA CTTTAAGACA ATTAGACTCA
AAAATAGTAG CCAAACGTCG CCTAGATTTT TTTGCTTATA CACTTTATTT AGAAGAAAAT
GAATCGAATT TTTTGCAGTT TTATACACAG TCGCAATGTT TAGAGTTACT TAAAAAATTA
GGTTTTAAAG TTAATCCTAA CGGTCAAGTT TGTAGCTCTT TAAATGAAGT TGAAGCATAT
TATCAGTACT GGGATAAACA ACGAGAAAAT CTACCTTATT TAACTGATGG AGTAGTTGTT
AAACTTAATT CTTTATCACT ACAAGAGAAG TTAGGATTTA CTCAAAAGTA CCCTCGGTGG
GCGATCGCTC TCAAATACCC TGCCGAAGAA ATTCCAACCA TTGTCCAAGG AGTTACAGTT
CAAGTAGGGC GTACTGGGGC CATAACTCCT GTGGCCGAAT TAAAACCAGT TCAGTTGGCA
GGGACAACTG TACAAAGGGC ATCTCTACAT AATAGCGATC GCTTGGCAGA ATTGGACTTA
CACATTGGGG ATACAGTAAT AGTCCGCAAG GCAGGGGAAA TTATTCCAGA GGTGGTCAGA
GTTTTACCAG AATTACGACC AAAAAAAGCT CAAAGATTTC AAATGCCCAC TCATTGTCCA
GAATGTAGTC AACCTCTAAT TAAACCTAGA AATGAGGCGG TAACTCGATG TATTAATACT
TCATGTCCCG CTATTCTTCG GGGATCATTA GCACACTGGG CATCTAGGGC AGCTTTGGAT
ATTAATGGTT TGGGAGAAAA GTTGGTGCAG CAGTTGGTTA ATAGTGGTTT GGTTAAGTCT
GTGGCAGATT TGTATAATTT GACTATGGAA GATTTGACTT CCCTGGAACG CATGGGGAAA
AAGTCGGCGA ATAAGTTGAT AGAAGCTATG GGGACTTCAA AAGCTCAACC CTGGAGGCGG
GTGCTTTATG GTTTGGGTAT TCGTCATGTA GGTACGGTGA ATGCAGAGTT GTTGACTCAA
AAATTTCCGA CTGTGGCACA GTTAAGCCAA GCAAAGGCAA CTGACATTGA AACAGTGCAT
GGTATTGGTC CTGAAATTGC TCAATATGTG GAACAGTGGT TTCGGGTACC AGCAAATCAG
AATTTAGTTG AACGTCTAAA AATTGCTGGA GTGACAATGG AGACCAAAGA CTCTACAAGT
GGTATGGCAA AGTTGACGGA AACTGTGCTA GCTATTCAGA ATTTAGCTGC ACGTCAGAAT
TTAGTTGCAC GTCAGAATTT AGAGAATTTA GTTGAACGTC TAAAAATTGC TGGAGTGACA
ATGGAGACCA AAGACTCTAC AAGTGATGTG GTAGAAGTGC AAAGTGGTTT GTTAAGAGGT
AAAACTTTTG TGTTGACGGG AACTTTGCCA ACTATGAGGC GAGATGAGGC AAAAAACTTG
ATTCAAAATG CTGGTGGTAA GGTTACAAGT TCGGTAAGTT CTAAGACTGA CTTTATTGTA
GTGGGAGAAG ATGGAGGCTC TAAGTTAGAG AAGGCAAAAA AATTAGGGGT GAAAGAGTTG
AGTGAGTCAG AGTTATTGGA AGCGTTGGCA GTGACTGGGA TATAG
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| Protein sequence | MAKLTLEVEQ YTQNLREKLQ EAGYSYYVLD QPIMEDAVYD HLLRELQELE SQYPQLIVSD
SPTQRVGEKP ATKFVSVKHN IPLYSLENAF NIQELKSWQE RWQRQTLLEN QRLTLPLRGE
VKIKNSIDES DNFSTVNSLA PVITGSNFDE IDLASVDYIC ELKIDGSALA LTYENGLLVR
GATRGDGIMG EDITQNVKTI NSIPLKLKVD NPPLLVEVRG EAFLSINVFE NINAEREKIG
EIIFANPRNA AAGTLRQLDS KIVAKRRLDF FAYTLYLEEN ESNFLQFYTQ SQCLELLKKL
GFKVNPNGQV CSSLNEVEAY YQYWDKQREN LPYLTDGVVV KLNSLSLQEK LGFTQKYPRW
AIALKYPAEE IPTIVQGVTV QVGRTGAITP VAELKPVQLA GTTVQRASLH NSDRLAELDL
HIGDTVIVRK AGEIIPEVVR VLPELRPKKA QRFQMPTHCP ECSQPLIKPR NEAVTRCINT
SCPAILRGSL AHWASRAALD INGLGEKLVQ QLVNSGLVKS VADLYNLTME DLTSLERMGK
KSANKLIEAM GTSKAQPWRR VLYGLGIRHV GTVNAELLTQ KFPTVAQLSQ AKATDIETVH
GIGPEIAQYV EQWFRVPANQ NLVERLKIAG VTMETKDSTS GMAKLTETVL AIQNLAARQN
LVARQNLENL VERLKIAGVT METKDSTSDV VEVQSGLLRG KTFVLTGTLP TMRRDEAKNL
IQNAGGKVTS SVSSKTDFIV VGEDGGSKLE KAKKLGVKEL SESELLEALA VTGI
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