Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_1108 |
Symbol | |
ID | 3760720 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 1192029 |
End bp | 1193393 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637785829 |
Product | diguanylate cyclase |
Protein accession | YP_391377 |
Protein GI | 78485452 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATTC TAATTGTTGA TCCATCCAAA AGTTACCGGG AAGTTGTTAA GGAAATCTTG TCGAATGAAG AGGTTAATGT CATTGAAGCG AAAAGCGGTC ATGAAGCCTT CACGTACTTA AAGCATAAAA CCCCCAGCGC GATTAGTATC GCGCATGAGC TGGGTGATAT GGACAGTTTT AAATTTTTAA AAACGGTTAA TTTAAATACG ATTTTATGCA ATGTTCCGAA GTTTTTATTA ACCTCTAATG CCTCGAAAGA TTTTAAAAGA AAAGCCTATG ATGCTGGTTT TACAGAGATT TTTGTTAAAT CGGATTTCCC AACTTTAAAA CGCGCTTTAA AAAGCTTGAT GCTCTATGCC ACGATGAATA TTTCTGCAAA AGTGCTGTAT GTGGAAGACA CGCAAAGCAC CGCAGACTAC ACCAGTCATA TTATGTATTC TGCTGGTTGG GAAGTTGATC ATGTTAAAAG CGGAGAAGCG GCGGCGGAGT TGTTGGATAA GCGTAAAGGG CATTATGATT TAGTGGTCAC TGACTTGGTA TTGGAAGGTA ATGTGAGCGG TATTGGCTTG ATAAACTTGA TTCGGCAAGG GCATGAAAAC ATTCGAGATA TTCCAATACT CGCTGTGTCA GGTTGGAATG ATTTATTACG ACAAGTTTAT GTTCTAAAAC ATGGTGCTGG GGATTTTATT GCCAAACCCT TTCATGAAAC AGACTTTTTG GCGCGTGCCA TTAATTTAAT CTTGAATAAA AAACATTTAG ACACCGTTAA AAGTGCTAAG AAGGCGCTGT ATTTAAAAGC GAATATAGAT GCCGCGACGG GTCTGAATAA CCGGCATTAT ATGGAAGAGT ACGGTGAAAA AATGGTGGCT GACTCCTGTG GGCGCAATGA AGGGATTACA CTTGCATTGG TCGATATTGA TCATTTTAAA AGCGTCAATG ACTCGTTAGG GCATGCTTCA GGAGATGCGG TATTAAAGCA AGTCGCCAGT TTAGTGAAAA GTCATTGCCA TTCAAATGAT CTGGTGATCC GTTATGGCGG AGATGAATTG CTTATTTTAA TGACGGATGT TGATCAGGCA TTAGCGACTG AGCGTCTTGA AATGATCCGA ATAGATGTTG CACGGTTGAA TCCGGTCAAT GTGCCGGTAA CGGTTACCAT TGGCGCCGCT TCTTGTGATA AGAAAACGAA ACCAGAGTTG ATGCAGTTAC TCAAAAGCCA AAATGGTGAT GCGGATAATG TGAGTGTGGA CTTGAAAACC TTATTTAAAA CGGCGGATGA TTCACTTTAT ATGGCAAAGC AATCAGGAAG AGATCAGGTG TGTGTGAATT CGCTCATGTC GGTTAATCAT CCGGAAGCAG AGTGA
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Protein sequence | MNILIVDPSK SYREVVKEIL SNEEVNVIEA KSGHEAFTYL KHKTPSAISI AHELGDMDSF KFLKTVNLNT ILCNVPKFLL TSNASKDFKR KAYDAGFTEI FVKSDFPTLK RALKSLMLYA TMNISAKVLY VEDTQSTADY TSHIMYSAGW EVDHVKSGEA AAELLDKRKG HYDLVVTDLV LEGNVSGIGL INLIRQGHEN IRDIPILAVS GWNDLLRQVY VLKHGAGDFI AKPFHETDFL ARAINLILNK KHLDTVKSAK KALYLKANID AATGLNNRHY MEEYGEKMVA DSCGRNEGIT LALVDIDHFK SVNDSLGHAS GDAVLKQVAS LVKSHCHSND LVIRYGGDEL LILMTDVDQA LATERLEMIR IDVARLNPVN VPVTVTIGAA SCDKKTKPEL MQLLKSQNGD ADNVSVDLKT LFKTADDSLY MAKQSGRDQV CVNSLMSVNH PEAE
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