Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_0509 |
Symbol | |
ID | 3761988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 569606 |
End bp | 571333 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637785220 |
Product | glycoside hydrolase family protein |
Protein accession | YP_390779 |
Protein GI | 78484854 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACAGA AAAAAATTAA ATTGGTTTTA TGTTGGCATA TGCACCAGCC TCATTATCGT GATGGTTTAA ACGGGGAATA CCGTTTACCT TGGGTGTATT TGCATGCAAT TAAAGACTAC ACCGATATGG TGGCTCACTT AGAAAATCAC TCGAATGCAA AAGTCGTGGT CAATTTTGCC CCCGTCTTAC TCGAGCAGCT GGAAGATTAC GCAAAACAAA TTCGATCCTG GTTGCAATCA GGCACACATA TCCAAGATGC CTTGCTGAAT CTATTGTCTG GGGAAACGCC CATTACATCG GACTTGGAAA CACGGTTTGA AATTGTTCAA GCCTGTCAAA AAGCGTTTGC ACCGACAATG ATTGACACGT TGCCTCCGTT TAAAAAACTG TTGAGTATGA CGCGTTGTGA TGAGTTGACA ACAATGGAAG AAGCCGCTTG TTTGGTGTAC TTTAATGAAC AGTTTTTCAT CGATCTATTG ATGTGGTATC ACCTTGCCTG GATGGGTGAA AGTTTAAGGC AGCAAGATGT TCGGGTTCAA AAATTGTTGG AAGTTGGCTA CAAGGCGGTT CATTTCACAA ACGAAGATCG CCGACGGATG CTGGAAGTGA TTGCGGATGC GATTGAAAAT ATTATCCCAC GCTATCGATC TTTGATGGAA AAAGGACAAA TTGAATTGTC CATGACACCT TATGGGCATC CGATCATTCC TTTGCTGATA GACTTTAACA GTATGAAAGA TGCGCAGCCA CATGATCCAA TGCCCGCCTC TGAGTGTTAT CCCGATGGTT ATGAACGCGC AAAATGGCAC ATAGAGCACG GGATGACCGT TTTTGAAGAC CATTTTGGGG CCAAGCCGAA AGGAATTTGG TTGTCTGAAG GTGCGATTAG TAGCGCCGCG ATAGGGTTGC TTGATCATTA TGAAATTCAA TGGACGGCTT CTGGGGAAGG CGTGTGGCGT CATTCCTGTG AAGCATCTCA TCTAGACCAT CACGATATTG CATCAAAACG CGCGTTATAC CAACCTCTGC AACATGCCTC ACAGGAGTGC GCAATGTTTT TCAGAGATGA TGGCTTATCC GATTTAATAG GGTTTCAGTA TAAAGATTGG AACCCTCAAG ATGCCGCAAA TAATTTTGCT CATCATTTAG AAAATATCGC CAACTCTTTA GGAGATCAGG TCGAAGATTA TGTGGTTTCG GTTATTTTGG ATGGTGAAAA TGCCTGGGAA TATTATTCTG ATAATGGGTA TGACTTTTTG TCGACGCTTT ACCATACGTT GATTCAGAAC CCACAGATTG AAATGACGAC TTTTTCTGAG GTTTTAGAAA CGGGTATCCG GCCCAGGCAT CTGCCGGTGT TAAAAGCCGG GAGCTGGGTT TATGGTTCTT TTTCAACTTG GATTGGAGAG CCGGATAAAA ATGCGGGCTG GGACTTGTTG GTCGATGCTA AGCTTACTTA TGACAAGGTC ATTGCCTCTG GTAAATTGTC TGCTGAACAA GAAGCCTTAG CGACAGAGCA GTTAGCGATT TGTGAAGGCT CTGACTGGTT CTGGTGGTTT GGAGACTACA ACCCTTCTGG CAGTGTTAAA GACTTCGATC AACTTTATCG GCGCCACCTT GAAAAACTCT TTTTATTACT AGGGGAAAAA CCCCCTGAAC AACTGTCGAT TCCGCTGTCG TATGGGGGTG GAGACATGGA AAATGCAGGC ACAATGAGAC GCAATTAA
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Protein sequence | MEQKKIKLVL CWHMHQPHYR DGLNGEYRLP WVYLHAIKDY TDMVAHLENH SNAKVVVNFA PVLLEQLEDY AKQIRSWLQS GTHIQDALLN LLSGETPITS DLETRFEIVQ ACQKAFAPTM IDTLPPFKKL LSMTRCDELT TMEEAACLVY FNEQFFIDLL MWYHLAWMGE SLRQQDVRVQ KLLEVGYKAV HFTNEDRRRM LEVIADAIEN IIPRYRSLME KGQIELSMTP YGHPIIPLLI DFNSMKDAQP HDPMPASECY PDGYERAKWH IEHGMTVFED HFGAKPKGIW LSEGAISSAA IGLLDHYEIQ WTASGEGVWR HSCEASHLDH HDIASKRALY QPLQHASQEC AMFFRDDGLS DLIGFQYKDW NPQDAANNFA HHLENIANSL GDQVEDYVVS VILDGENAWE YYSDNGYDFL STLYHTLIQN PQIEMTTFSE VLETGIRPRH LPVLKAGSWV YGSFSTWIGE PDKNAGWDLL VDAKLTYDKV IASGKLSAEQ EALATEQLAI CEGSDWFWWF GDYNPSGSVK DFDQLYRRHL EKLFLLLGEK PPEQLSIPLS YGGGDMENAG TMRRN
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