Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_0454 |
Symbol | |
ID | 3761481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 508730 |
End bp | 509851 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637785165 |
Product | secretion protein HlyD |
Protein accession | YP_390724 |
Protein GI | 78484799 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.63564 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACCA TGTCAAAACT GATGCTAACA AGTAGTTTGA TTGCGATGAT TGGCTTGTCT GGTTGTGGCC AAGACGCCGC ACAGGAAACA AGTGAAACAA ACGGTATTCA GCAAACCATT AAAGCGCCAG TTGAAACAGT TAGTTTGGGC ACAATTCCTT TGAAAGCGGT GGTTCCAGGT GCTGTGGTGC CTGATCAGAA GGCGCAAATT GCGTCACGTT TAATGGGTTA TATTAAGAAC TTTGAGGTCA AGGTCGGGCA GGAAGTTGAA AAAGGGGATT TACTGTTTTC AATTGATTCC AGTGATGTCA ACAGTCAGAT TTTAAAGGCA AAATCTGCTT ATCAACAGGC TCAGGCGGCG CTAAAAGATG CCAAGTTGGA TTACGATCGT TTTTCGAAAC TGTATAAAGA CGATTCGGTT TCTAAGCAGC AGTTCGATAA AGTCAGTTTG CAATATAAAG TGGCACAAGA GAATCTTGTG GCTGCGAAAA CCAACCTGAA TCAAGCAAGA TCTCAGTTAA ATTATGCTAA CGTTAAGGCG CCTTTTGATG GAGTTGTCGT CGATAAGATG GCGGTTGCGG GGGGACTGGC TGCACCTGGA AATCCGGTGC TGGTTTTAGA AAATTTAACG TCTTTAAGTG TTAAGACTCA GGTTGCGGAA GATTTATTTG CGGTGTTGCG CCTAGGAGAT GAAGCTGAAG TTATGATTGA TGGTCAACCG GAATCGATTA AAGGCACGAT TTACACGTTG GTCAGTGCGG CGGACCCTAA AACTCGAACG CATACCGTTA AATTGAGCTT GCCCTCAATG GTAAGCGTGA ACAGTGGAAC GTTTGCTCGT GTTGGGTTTA AACGGGGTGA AAGACAAACG ATGATGGTTC CAAAAACTGC GGTATTGAAC CGTTCAGGTA TTGAAGGCGT TTTTGTCGTC GAAGAGGGTA AAGCCTATTT TCATATGGTG CGTTTAGGCG AAGAAATTGG CAATAAAGTT GAAATTAAAG CCGGTTTGAA CCTAGGGGAT CATATCGTTG TTGATAACAA TACGAGTTTG TTAAATGGTG ACAAAGTCGA TGTGATTGAT TCGGAAAGTT CTGAAAGTAC GGTACAGAAA GGGGCTGCCT AA
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Protein sequence | MKTMSKLMLT SSLIAMIGLS GCGQDAAQET SETNGIQQTI KAPVETVSLG TIPLKAVVPG AVVPDQKAQI ASRLMGYIKN FEVKVGQEVE KGDLLFSIDS SDVNSQILKA KSAYQQAQAA LKDAKLDYDR FSKLYKDDSV SKQQFDKVSL QYKVAQENLV AAKTNLNQAR SQLNYANVKA PFDGVVVDKM AVAGGLAAPG NPVLVLENLT SLSVKTQVAE DLFAVLRLGD EAEVMIDGQP ESIKGTIYTL VSAADPKTRT HTVKLSLPSM VSVNSGTFAR VGFKRGERQT MMVPKTAVLN RSGIEGVFVV EEGKAYFHMV RLGEEIGNKV EIKAGLNLGD HIVVDNNTSL LNGDKVDVID SESSESTVQK GAA
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