| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0279 |
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| Symbol | |
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| ID | 3760657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 326773 |
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| End bp | 327531 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637784984 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_390549 |
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| Protein GI | 78484624 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0000931063 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAAACAG ACTGTCAACT CGACCAATTT AAAATACTGT ATCAGGACGA CTCCCTCGTC
GCCGTTCATA AGCCCGCTGG ACTACTTGTA CACCGTTCGC CTATAGACCG TCATGAAACG
CAGTTTGCCG TACAAATGAC TCGGGATCAA ATTAACCAAA AAGTCTATCC CTTGCATCGC
TTAGACAAAG CCACCTCGGG TTTATTACTG TTTGCACTTG ATTCAAACAC TGCACGATTA
ATGGGTCAGC AATTTGAAGA ACACACCATC CAAAAGCACT ATCTAGCAAT ATGCAGAGGC
TGGACAGCTG AACACGGAGA GATTGATCAC GCATTGAAAC ACAAGCTAGA CAAGCTGGGT
GATCGCCATG CACAAACTAA CAAACCGCCT CAAGAAGCCC TAACAAATTT TGAGCGCCTG
GCAACCACGG ATGTGATGCA CAAAATTGGA AAATTTGACT CTCAACGTTA TTCTTTAGTC
AAGCTAATGC CAAAAACAGG GCGAAAACAT CAACTTCGTC GACATTTAAA CCACATCAGT
CACCCGATCA TTGGAGATGT TAAATATGGT GATCGCCACC ACAATCATTT TTTCAATACG
TGGTTAGGCC AACACCGACT GTATCTAGCC GCCACAAGTT TAACGTTCAA CCACCCACAA
ACAAATGCAC GGATGACACT GAACGCACCC CTTGAATTAA GCTATCAAAA AGCCACACAA
CATCTTAACT GGCAAGAAGA AACGGCCACT TACATATAA
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| Protein sequence | MQTDCQLDQF KILYQDDSLV AVHKPAGLLV HRSPIDRHET QFAVQMTRDQ INQKVYPLHR
LDKATSGLLL FALDSNTARL MGQQFEEHTI QKHYLAICRG WTAEHGEIDH ALKHKLDKLG
DRHAQTNKPP QEALTNFERL ATTDVMHKIG KFDSQRYSLV KLMPKTGRKH QLRRHLNHIS
HPIIGDVKYG DRHHNHFFNT WLGQHRLYLA ATSLTFNHPQ TNARMTLNAP LELSYQKATQ
HLNWQEETAT YI
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