Gene Tbd_1302 details

Gene Information

• Locus tag: Tbd_1302
• ID: 3671874
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiobacillus denitrificans ATCC 25259
• Kingdom: Bacteria
• Replicon accession: NC_007404
• Strand: +
• Start bp: 1373561
• End bp: 1373935
• Gene Length: 375 bp
• Protein Length: 124 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637709987
• Product: type II secretion system protein
• Protein accession: YP_315060
• Protein GI: 74317320
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01710] general secretion pathway protein G; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.0879623
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGTGAAGA CGATGGTCAT GCGCAAGCGA GGCGCGGGTT TCACGCTGAT CGAGATTCTC 
GTCGTGATGG CGATCGTCGC GACCCTGCTG ACGATTGCCG CGCCGCGATA TTTCAACCAG 
AGCGACCGGG CAAAGGAGGC CGTGCTGCGC CAGAACCTCG CGGTGATGCG CGACGCGATC 
GACAAGTATT ACGGCGACGT CGGCGTCTAT CCCGAAAGCC TCGACGCGCT CGTCGCCGGC 
AAGTACCTGC GCCGCATTCC GCCCGATCCG ATCACCGAGA GCGACGCCAC CTGGGTGACC 
GTCTCGCCTG AGGATCCGGC GCAGGGCAGG GTATTCGACG TTCGCAGCGG CTCGCCCGCG 
CACGCGGCAT GGTGA 

 

Protein sequence

MVKTMVMRKR GAGFTLIEIL VVMAIVATLL TIAAPRYFNQ SDRAKEAVLR QNLAVMRDAI 
DKYYGDVGVY PESLDALVAG KYLRRIPPDP ITESDATWVT VSPEDPAQGR VFDVRSGSPA 
HAAW