| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1300 |
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| Symbol | |
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| ID | 3671872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1371056 |
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| End bp | 1373059 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637709985 |
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| Product | type II secretion system protein D |
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| Protein accession | YP_315058 |
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| Protein GI | 74317318 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.194357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAACGA AGCACGTCGT TGTGAGTCTT GTCTGTGTTC TGGGCCTTTC GGGCTGCGCT
GCCGACCGCG CCTTCACCCG CGGCAAGGGC ATGCTGGAGC AGGGCCAGAC CGAAGCCGGT
CTGCGCGAGG TCGAAAAGGC CGCGCGCATC GCCCCCGAGA ACAAGGAATA CCGGATCTAC
CTCGCGCGCC AGCGCGAGGG CTCGATCAAC ACGCTGCTCG GTGAGGCCGA GCAGGCGCGG
CGGACCGGGC GCCTCGACGC CGCCGAGCAG GCCTTCCGTC GCGCCCTCGC GCTCGATGCG
GAAAACCGTC GGGCGGCGGA CGGCCTCGAG GCCGTGGCGA CCGCGCGGAA GCATCGCGTG
CTGCTCGCCG AAGCCGAGAC GCTGGCCGTG CAGGGCAATC TCGCAGCCGC GGCGACGAAG
CTCGACACCG TGCTCGCCGA GGACCCGCGC AGTGCCGAGG GCCGCGCGCT GAAGACGCGA
CTCGCCGCGC TGAAGGCCGA GAAGCGGTCG GAACTGCCGG GCTTGCGCTC GCTCTTCGAG
AAGCCGATCA CGCTCGAATT CCGCAACGCC GACCTCAAGG CGATCTTCGA AGTCATCTCG
CGCAGCGCCG GGATCAATTT CATTTTCGAC AAGGACGTCC GCCAGGACCT CGTCGCGAGC
ATCTTCGTCA GGAACACGCG CATCGAGAGC GCGATCGACT TCCTGCTCAT GAGCAACCAG
CTCGCGAAGA AGGTGCTCAA CGAGAACACG GTTCTGGTCT ACCCGAACAT CCCGGCGAAG
ACCCGCGACT ACCAGGATCT TCGGGCCAAG ACCTTCTATC TCGCGAGCAT GGACGCCAAG
CAGGCGCTCA ACATCGTCAA GACCATCGTC AAGACCCGCG ACGTCGTCAT CGACGAGAAG
CTCAACACGC TCGTGATGCG CGATACCCCC GACGCGATCC GGCTCGCCGA AAAACTGCTC
GGAAGCCAGG ACCTCGCGGA ATCCGAGGTG CTGCTCGAGG TCGAAGTGCT CGAGGTCAGC
CGCAGCCGCC TGAGCGACAT CGGCATCACG CCGCCGACCG AGGCGACGTT CCGCACGCTC
GGTCCTTCGG GCGCGCCGAG CACGACGCTC GCCGATCTCA AAGGGCTCAA CTCCGGGCTG
ATCGGGGTGT CGTCGCTGAG CGCGAGCGTG CGCGCGCGCA TGGACAACGG CGATACCAAC
CTGCTCGCGA ACCCGCGCAT CCGCGTCAAG AACCGCGAGA AGGCCAAGGT GCACATCGGC
GAGCGCGTGC CGATCATCAC GACCACGGTG ACCTCGGCCG GCACGACGAG CTTTTTGCCC
GAGACGGTCA ACTATCTCGA CGTCGGCATC AAGTTCGAGG TCGAGCCGCT CATTTCGCTG
AACGACGAGG TGACGATCAA GGTCGCGCTC GAGGTGAGCA GCCTCGGACA GAAGAGCGTG
ACCAAGAGCG GCAGCGAGGT CTACCGGGTC GGCACGCGCA ACGCGTCGAC GACGCTCGCG
CTGCGCGATG GCGAAACGCA GGCGCTGGCT GGTCTCATCA GCGACGAGGA GCGCGAGACG
GTCAACGGGA TTCCCGGCTT CGGCCGCATC CCGGCGATCG GCCGGCTGTT CGCGAGCAAG
AGCAACAGCA CCGACAAGAC GGAGATCGTC CTCCTCATCA CGCCGCACAT CGTGCGCAAT
CTCGACCGCA CGGCGCTCAC CGCGTCCGAC TTCGCGGCCG GCACCGATTC GGCAGCCGGC
AGCGCGCCGG TGACGCTGCA GGCGATCACG CCCGAAGTCA TGCGCGCGGT CGAGGAAGGC
ACGGCAGGCG CGCCGGGCGC GGCGCCCGCG GCGCCGGCGG ACGCACCCGC AGGCGGCCAG
GCGCCAGCCG GGGTGGAGAT CGGACGCGAA CCGGCGGCCG AGGGCGGCGA CGCCGCGGGC
GAACCGGCCG CAGCGCAGGA CGCCGAACCG GGGAACGCAG CGCCCGAGCC CTCCGCCGAC
GGCGACGCAC AGGAAGGGTC CTAG
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| Protein sequence | MKTKHVVVSL VCVLGLSGCA ADRAFTRGKG MLEQGQTEAG LREVEKAARI APENKEYRIY
LARQREGSIN TLLGEAEQAR RTGRLDAAEQ AFRRALALDA ENRRAADGLE AVATARKHRV
LLAEAETLAV QGNLAAAATK LDTVLAEDPR SAEGRALKTR LAALKAEKRS ELPGLRSLFE
KPITLEFRNA DLKAIFEVIS RSAGINFIFD KDVRQDLVAS IFVRNTRIES AIDFLLMSNQ
LAKKVLNENT VLVYPNIPAK TRDYQDLRAK TFYLASMDAK QALNIVKTIV KTRDVVIDEK
LNTLVMRDTP DAIRLAEKLL GSQDLAESEV LLEVEVLEVS RSRLSDIGIT PPTEATFRTL
GPSGAPSTTL ADLKGLNSGL IGVSSLSASV RARMDNGDTN LLANPRIRVK NREKAKVHIG
ERVPIITTTV TSAGTTSFLP ETVNYLDVGI KFEVEPLISL NDEVTIKVAL EVSSLGQKSV
TKSGSEVYRV GTRNASTTLA LRDGETQALA GLISDEERET VNGIPGFGRI PAIGRLFASK
SNSTDKTEIV LLITPHIVRN LDRTALTASD FAAGTDSAAG SAPVTLQAIT PEVMRAVEEG
TAGAPGAAPA APADAPAGGQ APAGVEIGRE PAAEGGDAAG EPAAAQDAEP GNAAPEPSAD
GDAQEGS
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