Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3864 |
Symbol | |
ID | 4074927 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | - |
Start bp | 116076 |
End bp | 116963 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 638004521 |
Product | 2-keto-3-deoxygluconate kinase |
Protein accession | YP_611256 |
Protein GI | 99077997 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0524] Sugar kinases, ribokinase family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 54 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0735701 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACGGA TTGTCGTTAT CGGAGAATGC ATGGTTGAGA TGGCTCCCGT TGACGGCGGG CTTTATCGCA TGGGGTTTGC AGGCGATACC TTCAACATGG CATGGCACCT GAGATACCTA CTGGGTTCGG ATCATTGCGT CGACTATCTG AGCGCCGTGG GTGACGATAG CACATCGAAT GCGATGTTGG ATTTCATCCA GTCGCAGGGA GTTGGAATCG CCCACATTCG CCAGATTGCT GGTATGACTA CGGGCTTATA CTTGATCCGG CAAGAAAACG GCGATCGTGC CTTTAGCTAT TGGAGAGAAA CATCTGCTGC GCGGCAGCTC GCTGATGATC CAGCAGCCTT GGCACGAGCC TTGCAAGAGG CCGATTTGGT CTGCCTGTCC GGTATTACAC TAGCCATTCT ATCACCCAAG GCGCGCGAAG TACTTTGGGC GGCAATTACA GAATCTGGTG CGCAGGTTGC TTTTGATCCC AACATCAGAC CAACACTGTG GAGTAGCCAA GAAGACTGTC GTGCTGCTCT GACGTATGCG GCGGTGCGAT CTGATGTGAT CTTGCCCAGC TTTGACGACG ATGCTGCGCT GTTTGGGGAT GTCGCGCCTC AAGCGACGGT GGCGCGTTAC ACACGCCTCG GTGTAGGGGA GGTCGTGGTG AAAGATGCAG CGCGTCCTGC GATCTATTCC GGCTCTGACG GCACTTTAGA AATCGCCGCC GACAGACTGG CGGTGCCCGT TGTTGACGCG ACGGGTGCGG GTGACTCTTT TAATGCGGCA TGGCTCGCCG CTCGCTTGCA GGGCGCTGCA CCCAAAGAGG CCTTGATTGC TGCGCACAAG CATGCGGCGT GCGTTTTGCA AGTGTCCGGA GCGTTGCTCG TTTCGTAA
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Protein sequence | MTRIVVIGEC MVEMAPVDGG LYRMGFAGDT FNMAWHLRYL LGSDHCVDYL SAVGDDSTSN AMLDFIQSQG VGIAHIRQIA GMTTGLYLIR QENGDRAFSY WRETSAARQL ADDPAALARA LQEADLVCLS GITLAILSPK AREVLWAAIT ESGAQVAFDP NIRPTLWSSQ EDCRAALTYA AVRSDVILPS FDDDAALFGD VAPQATVARY TRLGVGEVVV KDAARPAIYS GSDGTLEIAA DRLAVPVVDA TGAGDSFNAA WLAARLQGAA PKEALIAAHK HAACVLQVSG ALLVS
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