| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3553 |
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| Symbol | |
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| ID | 4075229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 597614 |
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| End bp | 598792 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638005065 |
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| Product | phage integrase |
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| Protein accession | YP_611784 |
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| Protein GI | 99078526 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.631113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.139012 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGAGA CCATTTCGCC TGCGTTCACC TTCGTGAAGG ATGGCGTTTT CTACTTCAGC
CGCCGCATCC CCAAAGACCT GAAGAAGCAC TACACCTCAC CTCGCATTGC CTACTCATTA
CGAACGCGGT CTGCTCGCAT CGCTGAAGCG CGGGCCAGAA GAGCCGCCGA TCAGTTGGAT
GAGTACTGGT ATCACCTCCG CTCAAAGGAT GTGGAACTGC CGGGTAAGCA TATGCTGAGA
ATGCAGTCCG AGGGGCGTGT CGCGGTCAGT GCAGCAGCCC CTGAGATTTC CTCTTCATCT
GTTCTTTTGT CCGAAGCTGT CGGCATCTAC CTGCGCCTGA AAGGGCAAGG ACGACCAGAG
ACATTCCACC GCGCAGCGGA ACGATCTTGC GGCTATGTCA TCGACGCCTG CGGTGACAAA
CAGCTCGACG CCTTCACCAA GGCCGATGCC AACAAGTTCA GGGATGCGCT CATCGAACGT
GGATTGGCTG GCAGCAGTAT AACACGCATA TTTGGGACCG TTCGCGCGGT CACAAACTTT
GCAGCCAGTG AGCTTGGCCT GACCCTGACC AATCCTTTCA ACGGGGTCTA CTACGACCGA
GAGGCTGGCG TAAGTGATCG CAACCCAATC CCAGCGGATG CACTCAAAGT GGTTCAGGGC
CAGTGCCGCC AACTGGACGA TGACATGAGG TGGCTTGTAG CGCTCGTGTC GGACACGGGA
ATGCGGCTTG CTGAGGCCGC AGGAATGGCG AGACAGGACA TTGAACGGCG GTCAGATGGT
TCTCTGGTTG CCTGGGTGCG TCCACACCCG TGGCGGCGTC TGAAAACCAA GGGCAGTGAG
CGTGTCGTCC CGTTGGAGGG GCAAGCCAAG TGGGCTGCAG AGCGTTTGCT GAGCGAGGTC
GTTGAAAGCG ATTTCCTCTT CCCGCGCTAC AACAGAAAGC CCCAGACAAA TGCCAACGCT
GCCAGCGCTG CACTGAACAA ATGGATAAAG CAAATGACAC CAGAAGGATG CACTATGCAC
AGCTTCCGCC ATTCGATGCG GGATCGTCTT CGCGCCGTTG AGTGTCCTTC CGACATCGTC
GATCAGATCG GGGGCTGGCA GACTGATGGT GTCGGCCACG GGTATGGTTC TGGTTACCCG
GTTGAAGTTC TGCAGAAGTG GATGAAGGCA GTCACCTGA
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| Protein sequence | MSETISPAFT FVKDGVFYFS RRIPKDLKKH YTSPRIAYSL RTRSARIAEA RARRAADQLD
EYWYHLRSKD VELPGKHMLR MQSEGRVAVS AAAPEISSSS VLLSEAVGIY LRLKGQGRPE
TFHRAAERSC GYVIDACGDK QLDAFTKADA NKFRDALIER GLAGSSITRI FGTVRAVTNF
AASELGLTLT NPFNGVYYDR EAGVSDRNPI PADALKVVQG QCRQLDDDMR WLVALVSDTG
MRLAEAAGMA RQDIERRSDG SLVAWVRPHP WRRLKTKGSE RVVPLEGQAK WAAERLLSEV
VESDFLFPRY NRKPQTNANA ASAALNKWIK QMTPEGCTMH SFRHSMRDRL RAVECPSDIV
DQIGGWQTDG VGHGYGSGYP VEVLQKWMKA VT
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