| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3364 |
|---|
| Symbol | |
|---|
| ID | 4075263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 375128 |
|---|
| End bp | 376234 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638004872 |
|---|
| Product | oxidoreductase-like |
|---|
| Protein accession | YP_611598 |
|---|
| Protein GI | 99078340 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.674372 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAC CCACGCAATA TGGTATCATC GGCTGCGGCA TGATGGGTCA GGAACACCTT
CGCAATATCG CTCTGCTTCC CGACGCCAGG GTCGCCGCAA TCTTTGAGCC AAACGCTCTG
ATGCAGGCAG AGGCGGCAAA ATTCGCTCCC GACGCGCAAT TCGTCGACAG TGTCGAAGCG
CTTTTGGCCA TTGCAGAGCT GGACTGCATT ATGATTGCCA GTCCCAACTT CAGGCACGTT
GAACAGCTCG AAACATTGGC CTCACAGAAC CCGCTGCCGG TTCTCGTTGA AAAGCCATTG
TTCACAACCC TCGACGATCT CAACCGGATT GAGGAGTTCG CTGCGCATTA CCCCGCTCCG
GTCTGGGTTG CGATGGAATA TCGCTACATG CCGCCGATCA CAGCATTCCT GAACGAGGCC
GATACCGCGA CGGGCGGCAT CAAGATGTTG ACGGTGCGTG AACATCGGTT CCCTTTCCTT
AGCAAGGTCG ACGATTGGAA CCGCTTCAAC GCCCAATCGG GTGGCACCTT CGTGGAAAAA
TGCTGCCACT TCTTCGATCT GATGCGTCTG GCGCTCAAAT CCGAGCCCGT GCGCATCATG
GCCTCGGGCG GACAGGACGT GAATCATCTC GACGAGCGTT ACGATGGGTC CGTCCCGGAT
ATTCTCGACA ATGGCTATGT GATCGTCGAA TTCGAGTCAG GCGCGCGCGC CATGCTGGAG
TTGTGTATGT TCGCAGAAGG ATCGAAATAC CAGGAAGACG TCTCTGCCGT CGGCCCCAAC
GGAAAAGTCG AGGCTTTTGT GCCCGGTCCC GGCCGCTTCT GGCCGTCCCA TCTGGGTGAC
GCCCCTGTGC CCAAGCTTGT GCTTTCGCCG CGCAATCCCA AAGGGCCAGA AGAGCGCGAT
ATTCCCGTCG ATCCCACGAT CCTTGATGCA GGGGATCACA ATGGATCGAC CTTCTACCAG
CACCAGAAAT TTCTCGAACT GGTGCGCGGG GAGCGTAGCA CCCCCGAAGT CAGCCTGAAT
GACGGCAAAA TGGCCGTCTT GATGGGGTTG GCCGCACAGA TGTCGATTGC CGAGAACCGC
ACCGTGGAGA TATCCGAATT GCTGTAG
|
|---|
| Protein sequence | MSKPTQYGII GCGMMGQEHL RNIALLPDAR VAAIFEPNAL MQAEAAKFAP DAQFVDSVEA
LLAIAELDCI MIASPNFRHV EQLETLASQN PLPVLVEKPL FTTLDDLNRI EEFAAHYPAP
VWVAMEYRYM PPITAFLNEA DTATGGIKML TVREHRFPFL SKVDDWNRFN AQSGGTFVEK
CCHFFDLMRL ALKSEPVRIM ASGGQDVNHL DERYDGSVPD ILDNGYVIVE FESGARAMLE
LCMFAEGSKY QEDVSAVGPN GKVEAFVPGP GRFWPSHLGD APVPKLVLSP RNPKGPEERD
IPVDPTILDA GDHNGSTFYQ HQKFLELVRG ERSTPEVSLN DGKMAVLMGL AAQMSIAENR
TVEISELL
|
|---|
| |