Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3308 |
Symbol | |
ID | 4075712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 316810 |
End bp | 317850 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638004816 |
Product | LacI family transcription regulator |
Protein accession | YP_611542 |
Protein GI | 99078284 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.608255 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.781204 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTCA AAGAACTTTC GGCAGTCCTT GGTCTGTCAC AAACCACCGT GAGCCGAGCG CTAAACGGCT ATCCCGAAGT CAGCGAGGCT ACGCGCAAGC GCGTGATGCA GGCCGCCCAA GATCACAATT ATCGCCCCAA CACCCGTGCC AAGGCATTGG CGACGGGGCG CGCGATGGCA ATCGGTCATG TGATTCCGCT CTCGACCCAG CACGAGATGA TGAACCCGAT TTTCAGCGAC TTCATTGCGG GCGCCGGAGA GAGCTACAGC CAAGCAGGCT ACGACATGGT GCTCTCACTG GTCGCCGACG AAGATCAGTC CCGCGCCTAT CACGAAATGG CCGCCAAGCG GAACGTGGAT GGCATCGTGT TGCACGCACC AAAGATGCGC GACTCTCGGA TTACGATGCT GCAAGAGATC GGCCTGCCCT TTGCAGTGCA TGGGCGCGCC ACCGATATTT CCAGACCTTA CAGCTGGCTC GACGTGAACA ATACCAGCGC GTTTCGGCGC GCAACCGACT TTCTGCTGGA TCTGGGCCAC CGCCGGATCT GCCTTGTGAA CGGTCAAGAG AGCATGGATT TCGCGCACCG CCGCCGCCAG GGCTATGAGG CGGCGCTGCA GGCACGCGGA ATCCCAGTTG ATCCCGCCCT GATGACGGCA GGAGAGATGA CCGAAGTCTA TGGCTACGAC ACCGTGCAAC GCACGCAGGC ACTGGAAGAT CCGCCCACCG CCTATCTGGT GTCCTCGATC ATCGCCGCCT TTGGTGTGCG CCGCGCAATC GAAGAATCCG GGCTCAAAAT GGGGCGCGAC ATTTCGGTTA TCACCCATGA CGACGACCTG TCTTATCTGC GAAACGGGGC CGATGTGCCG GTCTTTACCG CCACTCGTTC CTCGGTGCGC GATGCCGGGC GCAGGTTGGC CAAACTCCTG ATTTCACAGA TCGAAGACCC GGGCGATGCG CCCTTGACTG AGCTTTTGGA AGCCGAACTC ACTGTCGGTC GCTCAACAGG CCCCGCCCCC AACAGGACAT CAAAGACATG A
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Protein sequence | MNLKELSAVL GLSQTTVSRA LNGYPEVSEA TRKRVMQAAQ DHNYRPNTRA KALATGRAMA IGHVIPLSTQ HEMMNPIFSD FIAGAGESYS QAGYDMVLSL VADEDQSRAY HEMAAKRNVD GIVLHAPKMR DSRITMLQEI GLPFAVHGRA TDISRPYSWL DVNNTSAFRR ATDFLLDLGH RRICLVNGQE SMDFAHRRRQ GYEAALQARG IPVDPALMTA GEMTEVYGYD TVQRTQALED PPTAYLVSSI IAAFGVRRAI EESGLKMGRD ISVITHDDDL SYLRNGADVP VFTATRSSVR DAGRRLAKLL ISQIEDPGDA PLTELLEAEL TVGRSTGPAP NRTSKT
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