| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3304 |
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| Symbol | |
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| ID | 4075708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 311182 |
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| End bp | 312834 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004812 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_611538 |
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| Protein GI | 99078280 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.251779 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.854548 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCTC AGACCACAAT CAACCCTGCT TCGGTGCTGT CCAATGACCC GGATTGGTGG
CGCGGTGCGG TGATCTACCA GATTTATCCG CGCAGCTACC AAGACAGCAA TGGCGACGGC
ATCGGGGATC TGCAGGGTAT CACGTCACGT CTGGACCACA TCGCCTCTCT TGGGGTGGAT
GCCATCTGGA TTTCGCCCTT TTTCACGTCA CCGATGAAAG ACTATGGCTA CGATGTCAGC
GACTACTGCG ATGTTGATCC GATGTTTGGC AACCTCGCAG ATTTTGACGC GCTGGTGGCG
CGGGCGCATG ATCTCGGCCT GCGGGTGATG ATCGATCTGG TGCTGTCGCA TAGTTCGGAT
CAGCACCCTT GGTTCGCCGA GAGCCGTCAG AGCCGCGACA ACCCAAAGGC CGACTGGTAC
GTCTGGGCCG ATCCCCAAGA AGACGGCACG CCGCCGAACA ACTGGCTGTC GATCTTTGGC
GGTTCCGCCT GGCATTGGGA CGCGCGCCGC GAGCAATATT ATCTGCACAA TTTTCTGGTC
TCGCAGCCTG ACCTAAATTT CCATTGTCCG GACGTGCAGA ATGCGCTTTT GGATGTGACC
CGCTTCTGGC TCGAGCGGGG AGTCGATGGG TTCCGCTTGG ACACCATCAA TTTCTACATC
CACGACAAGG AGTTGCGGTC GAACCCAGCG CTTCCCAAGG ATCAGCGCAA TGCCAATATC
GCCCCTTCGG TGAACCCCTA TAACCATCAG GAACACCTCT ACTCCAAGAA CCAGCCGGAA
AACCTCGATT TTCTCGCGCG GTTCCGTGCG CTTTTGGACG AATACCCGGC CAAGACCGCG
GTTGGCGAAG TCGGCGATGC GCAGCGCGGG CTGGAACTAT TGGGACAGTA CACGGCCGGC
AACACCGGTG TCCACATGTG CTATGCCTTC GAGTTCCTGG CCAAAGATCC GCTAACCGCC
GCGCGCGTGG CTGAGGTTTT TGAGCGCACA GATGAGGTAG CAGCCGATGG TTGGGCCTGT
TGGGCCTTCT CCAACCATGA TGTTCAGCGG CACGTCAGCC GATGGGGGTT GTCGGACGCT
GCGCTGCGCC TCCATGCGAC TTTGATCATG TGCCTCCGCG GCTCTGTCTG CATCTATCAG
GGCGAAGAAC TGGGGCTGCC AGAGGCCGAT ATTTCCTTTG AAGATCTGCA AGATCCCTAT
GGGATTGAGT TCTGGCCTGA ATTCAAAGGA CGCGATGGAT GCCGCACTCC GATGGTCTGG
CGCAGCGACA ATACGCATGG CGGCTTCTCC GAGGCGCGTC CTTGGCTGCC GGTCAGCCTC
GAGCATGCGG CGCTGTCCGT AGCAGAGCAA GAAGCAAACC CCGATGCGTT GCTGCACCAC
TACCGCCGCG TGATTGCCCT GCGACGCGCC CACGCGGCAC TGTCGCACGG AACCCACGAC
AAGGTCGTGG CAAGCGGGTC TGTCGTTCAT TTTCTGCGCA GCGCCGAGTC CGAGGACATC
TTCTGTGCCT TCAATCTTGG CGAGGCGGCG GCAGAGGTCA GCTTGCCCGC GGGAACGTGG
GAGCAGCTTG GTGCTGACAT CGGCACTGCC GAAATCAATG GTGATCTGGT GAAACTTGGC
CCTTGGCAAG CCTGCCTCGT ACGGCGCGTA TAA
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| Protein sequence | MNAQTTINPA SVLSNDPDWW RGAVIYQIYP RSYQDSNGDG IGDLQGITSR LDHIASLGVD
AIWISPFFTS PMKDYGYDVS DYCDVDPMFG NLADFDALVA RAHDLGLRVM IDLVLSHSSD
QHPWFAESRQ SRDNPKADWY VWADPQEDGT PPNNWLSIFG GSAWHWDARR EQYYLHNFLV
SQPDLNFHCP DVQNALLDVT RFWLERGVDG FRLDTINFYI HDKELRSNPA LPKDQRNANI
APSVNPYNHQ EHLYSKNQPE NLDFLARFRA LLDEYPAKTA VGEVGDAQRG LELLGQYTAG
NTGVHMCYAF EFLAKDPLTA ARVAEVFERT DEVAADGWAC WAFSNHDVQR HVSRWGLSDA
ALRLHATLIM CLRGSVCIYQ GEELGLPEAD ISFEDLQDPY GIEFWPEFKG RDGCRTPMVW
RSDNTHGGFS EARPWLPVSL EHAALSVAEQ EANPDALLHH YRRVIALRRA HAALSHGTHD
KVVASGSVVH FLRSAESEDI FCAFNLGEAA AEVSLPAGTW EQLGADIGTA EINGDLVKLG
PWQACLVRRV
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